RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 EFHD2Q96C19 240 aaPredicted RBP10.55□□□□□ -0.72
USP3-220ENST00000561381 TMCO6Q96DC7 493 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 VSTM2LQ96N03 204 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 ALPK1Q96QP1 1244 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 KCNA7Q96RP8 456 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 ZNF382Q96SR6 550 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 TSPYL1Q9H0U9 437 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 PLEKHF2Q9H8W4 249 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 FOLH1BQ9HBA9 442 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 DLL4Q9NR61 685 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 GALNT8Q9NY28 637 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 CLCF1Q9UBD9 225 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 RPH3AQ9Y2J0 694 aaPredicted RBP10.55□□□□□ -0.72
USP3-220ENST00000561381 TIMM22Q9Y584 194 aa10.55□□□□□ -0.72
USP3-220ENST00000561381 NAV3Q8IVL0 2385 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 NF1P21359 2839 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 GNG14A0A1W2PPG7 69 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 GOLGA8RI6L899 631 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 PLOD2O00469 737 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 ZIC3O60481 467 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 ULK1O75385 1050 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 TGM6O95932 706 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 RAF1P04049 648 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 HRGP04196 525 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 DRD2P14416 443 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 HOXB4P17483 251 aaPredicted RBP10.54□□□□□ -0.72
USP3-220ENST00000561381 TAC1P20366 129 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 IMPDH1P20839 514 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 GRK2P25098 689 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 HMOX2P30519 316 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 SRD5A2P31213 254 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 TIA1P31483 386 aaKnown RBP eCLIP10.54□□□□□ -0.72
USP3-220ENST00000561381 GAS1P54826 345 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 CLDN18P56856 261 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 GUCA2AQ02747 115 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 ACSM2AQ08AH3 577 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 KEAP1Q14145 624 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 ERCC6LQ2NKX8 1250 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 ACSM2BQ68CK6 577 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 TIFABQ6ZNK6 161 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 SLC44A2Q8IWA5 706 aaPredicted RBP10.54□□□□□ -0.72
USP3-220ENST00000561381 RNF138Q8WVD3 245 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 MBD6Q96DN6 1003 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 MTBPQ96DY7 904 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 C11orf24Q96F05 449 aaPredicted RBP10.54□□□□□ -0.72
USP3-220ENST00000561381 SFXN2Q96NB2 322 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 UCN2Q96RP3 112 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 TM9SF2Q99805 663 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 YIPF4Q9BSR8 244 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 SFXN3Q9BWM7 321 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 SLC35C2Q9NQQ7 365 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 FLRT3Q9NZU0 649 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 DKKL1Q9UK85 242 aa10.54□□□□□ -0.72
USP3-220ENST00000561381 PCNX3Q9H6A9 2034 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 UBFD1O14562 309 aaKnown RBP10.53□□□□□ -0.72
USP3-220ENST00000561381 SCO2O43819 266 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 PLOD3O60568 738 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 TNFSF13O75888 250 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 BCAS2O75934 225 aaPredicted RBP10.53□□□□□ -0.72
USP3-220ENST00000561381 ZNF708P17019 499 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 ATP5F1P24539 256 aaPredicted RBP10.53□□□□□ -0.72
USP3-220ENST00000561381 DPP4P27487 766 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 IL12BP29460 328 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 CPA2P48052 419 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 PRKAA2P54646 552 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 FOXA1P55317 472 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 B3GALT5-AS1P59052 145 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 PSG6Q00889 435 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 EFR3AQ14156 821 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 DEFB113Q30KQ7 82 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 KRTAP21-3Q3LHN1 58 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 SPIN4Q56A73 249 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 AAGABQ6PD74 315 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 CAMKMTQ7Z624 323 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 GRAMD2AQ8IUY3 354 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 FAM9CQ8IZT9 166 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 GBP7Q8N8V2 638 aaPredicted RBP10.53□□□□□ -0.72
USP3-220ENST00000561381 WFDC11Q8NEX6 87 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 ERP27Q96DN0 273 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 ZFP3Q96NJ6 502 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 RTN4RQ9BZR6 473 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 NFU1Q9UMS0 254 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 EDARQ9UNE0 448 aa10.53□□□□□ -0.72
USP3-220ENST00000561381 A0A1W2PNV4 684 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 SH3D21A4FU49 640 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 A8MXE2 369 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 H0YC42 278 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 HCRTR2O43614 444 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 JUNP05412 331 aaKnown RBP10.52□□□□□ -0.73
USP3-220ENST00000561381 ENO1P06733 434 aaKnown RBP10.52□□□□□ -0.73
USP3-220ENST00000561381 ABHD2P08910 425 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 ANXA4P09525 319 aaPredicted RBP10.52□□□□□ -0.73
USP3-220ENST00000561381 EVI2BP34910 448 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 KRT20P35900 424 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 MC3RP41968 323 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 PNLIPRP2P54317 469 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 TPD52P55327 224 aaPredicted RBP10.52□□□□□ -0.73
USP3-220ENST00000561381 CLDN15P56746 228 aa10.52□□□□□ -0.73
USP3-220ENST00000561381 ZNF155Q12901 538 aaPredicted RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms