RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZNF41P51814 821 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CRYZQ08257 329 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 MAP4K2Q12851 820 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NR1D2Q14995 579 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 DUSP5Q16690 384 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF630Q2M218 657 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 GGTA1PQ4G0N0 100 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 XKR7Q5GH72 579 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 DCST2Q5T1A1 773 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 C10orf62Q5T681 223 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 DESI1Q6ICB0 168 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ZFP1Q6P2D0 407 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 P4HA3Q7Z4N8 544 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PACS2Q86VP3 889 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 LAS2Q8IYD9 372 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 KDM8Q8N371 416 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TMEM52Q8NDY8 209 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CATSPER1Q8NEC5 780 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 OR10G2Q8NGC3 310 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TEX47Q8TBZ9 253 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ELP4Q96EB1 424 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 MS4A4EQ96PG1 132 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PRRX2Q99811 253 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TREX2Q9BQ50 279 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 VN1R1Q9GZP7 353 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 POLR2J3Q9H1A7 115 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 EPB41L1Q9H4G0 881 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NECTIN3Q9NQS3 549 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PRDM7Q9NQW5 492 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TOR4AQ9NXH8 423 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CNIH4Q9P003 139 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 AASSQ9UDR5 926 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ACAD8Q9UKU7 415 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NTNG1Q9Y2I2 539 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 DOCK4Q8N1I0 1966 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 WDFY4Q6ZS81 3184 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 FAM171A2A8MVW0 826 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PRR33A8MZF0 331 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF195O14628 629 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TP53I11O14683 189 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 RRP8O43159 456 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PROM1O43490 865 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 RAD1O60671 282 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CTNSO60931 367 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 OR2J2O76002 312 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ZFAND5O76080 213 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NSA2O95478 260 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 H1F0P07305 194 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CELA2AP08217 269 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 GP1BBP13224 206 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF28P17035 718 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PDX1P52945 283 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 AQP4P55087 323 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ACTR3P61158 418 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PHC1P78364 1004 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 SLC14A1Q13336 389 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ISXQ2M1V0 245 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ODF4Q2M2E3 257 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TCTN3Q6NUS6 607 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 SLC30A6Q6NXT4 461 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 C1orf94Q6P1W5 598 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 YTHDF3Q7Z739 585 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 RPS19BP1Q86WX3 136 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 RAB43Q86YS6 212 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 RBM45Q8IUH3 476 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ST13P4Q8IZP2 240 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CYP4Z2PQ8N1L4 340 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 SLC5A8Q8N695 610 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CDRT4Q8N9R6 151 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 AQP11Q8NBQ7 271 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 OR5L2Q8NGL0 311 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 GIPC3Q8TF64 312 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 THAP11Q96EK4 314 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PYURFQ96I23 114 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 LMF1Q96S06 567 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NXF5Q9H1B4 397 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PTGES2Q9H7Z7 377 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 THUMPD1Q9NXG2 353 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 SCN3BQ9NY72 215 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 BTNL2Q9UIR0 455 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 KCNE3Q9Y6H6 103 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CSNK1G3Q9Y6M4 447 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ZFC3H1O60293 1989 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TLN1Q9Y490 2541 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PKDREJQ9NTG1 2253 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 PTPN13Q12923 2485 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 SHISA8B8ZZ34 492 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 STMND1H3BQB6 276 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 TRANK1O15050 2925 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 HNRNPRO43390 633 aaKnown RBP5.07□□□□□ -1.6
VPS13C-209ENST00000560637 CCNB2O95067 398 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 RAP2AP10114 183 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 CCNOP22674 350 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 GDF1P27539 372 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 TEAD1P28347 426 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 IFNGR2P38484 337 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 ETV5P41161 510 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 KCNC4Q03721 635 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 DNASE1L3Q13609 305 aa5.07□□□□□ -1.6
VPS13C-209ENST00000560637 AGERQ15109 404 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms