RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CSO75390 466 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 RGS11O94810 467 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 NFATC1O95644 943 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 S100A9P06702 114 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 CYP4B1P13584 511 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 IL11P20809 199 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 HOXD9P28356 352 aaPredicted RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 PCGF2P35227 344 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 PIK3CGP48736 1102 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 HTD2P86397 168 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 IL10RBQ08334 325 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 POU4F3Q15319 338 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 FCN2Q15485 313 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 TAF12Q16514 161 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 MS4A13Q5J8X5 152 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 TCTE1Q5JU00 501 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SYPL2Q5VXT5 272 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 TXNDC8Q6A555 127 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 FDX2Q6P4F2 183 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 AFTPHQ6ULP2 937 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 FAM198BQ6UWH4 519 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 LAS2Q8IYD9 372 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SLC34A3Q8N130 599 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 ATPAF2Q8N5M1 289 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OR1M1Q8NGA1 313 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OR8D4Q8NGM9 314 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 IFI44Q8TCB0 444 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 IRF7Q92985 503 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OTUB1Q96FW1 271 aaPredicted RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 IMP4Q96G21 291 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 MYO19Q96H55 970 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 LINC00052Q96N35 136 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 PIP5K1AQ99755 562 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 GABRG3Q99928 467 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 ZNF251Q9BRH9 671 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 CCM2Q9BSQ5 444 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 EDEM2Q9BV94 578 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SORBS1Q9BX66 1292 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 JAM3Q9BX67 310 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 FSD1LQ9BXM9 530 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 BEX2Q9BXY8 128 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OR10A4Q9H209 315 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OR51J1Q9H342 316 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 CATSPERZQ9NTU4 200 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 IMPAD1Q9NX62 359 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SLC2A6Q9UGQ3 507 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 HCN2Q9UL51 889 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SCML1Q9UN30 329 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 CIB4A0PJX0 185 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 MAN2B1O00754 1011 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 RPP40O75818 363 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 SIX3O95343 332 aaPredicted RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 PLATP00750 562 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 EGFP01133 1207 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SRCP12931 536 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 CPN1P15169 458 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 HLA-DPA1P20036 260 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 GABRA5P31644 462 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 POU3F4P49335 361 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 STC1P52823 247 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 RPP30P78346 268 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 ALDH6A1Q02252 535 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 RPA4Q13156 261 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 GTF2H3Q13889 308 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 MLF2Q15773 248 aaPredicted RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 AP5B1Q2VPB7 878 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 GGTA1PQ4G0N0 100 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 CCDC157Q569K6 752 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 ADGRF1Q5T601 910 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SDHAF4Q5VUM1 108 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 C3P1Q6ZMU1 363 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 RPS27LQ71UM5 84 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 SKA3Q8IX90 412 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 TEX26Q8N6G2 289 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 DTX3Q8N9I9 347 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 ZBTB34Q8NCN2 500 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OR10G2Q8NGC3 310 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 OR6S1Q8NH40 331 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SH3RF2Q8TEC5 729 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 USP7Q93009 1102 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 NSUN5Q96P11 429 aaKnown RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 SPATA5L1Q9BVQ7 753 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 COL25A1Q9BXS0 654 aaPredicted RBP4.96□□□□□ -1.62
USP28-213ENST00000544967 ATXN3LQ9H3M9 355 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 IKZF5Q9H5V7 419 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 GALNT9Q9HCQ5 603 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 DLL4Q9NR61 685 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 PIGVQ9NUD9 493 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 MS4A12Q9NXJ0 267 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 ACTR10Q9NZ32 417 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 A0A087X0M5 115 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 A0A1B0GX30 115 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 OTOL1A6NHN0 477 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 H7C2Y5 167 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 M0QYT0 321 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 LILRB5O75023 590 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 NMBP08949 121 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FOLR2P14207 255 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ITGALP20701 1170 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 DNASE1P24855 282 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms