RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ASCC3Q8N3C0 2202 aaKnown RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 KIAA0100Q14667 2235 aaKnown RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 A0A1W2PRU2 124 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 F8W036 122 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 HOXA9P31269 272 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 BLOC1S1P78537 153 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 C18orf63Q68DL7 685 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 SSX6Q7RTT6 188 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ZSCAN1Q8NBB4 408 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 OR51A7Q8NH64 312 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 LCN9Q8WX39 176 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF354BQ96LW1 612 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 EFCAB11Q9BUY7 163 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 KATNB1Q9BVA0 655 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 XKR8Q9H6D3 395 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 HHATLQ9HCP6 504 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 PLCXD1Q9NUJ7 323 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 RCE1Q9Y256 329 aa13.47□□□□□ -0.25
LIMS1-215ENST00000544547 FARSAQ9Y285 508 aaKnown RBP13.47□□□□□ -0.25
LIMS1-215ENST00000544547 hCG_1807616A0A1W2PRN6 198 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 TAPBPO15533 448 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 SERPINA3P01011 423 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 TFPIP10646 304 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 ETV6P41212 452 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 NAA10P41227 235 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-215ENST00000544547 EPHA5P54756 1037 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 LIPJQ5W064 366 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 TXNDC8Q6A555 127 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 COMMD6Q7Z4G1 85 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-215ENST00000544547 HCAR2Q8TDS4 363 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 HERVK_113Q902F9 699 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 ABCG4Q9H172 646 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 EGLN3Q9H6Z9 239 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 DDX31Q9H8H2 851 aaKnown RBP13.46□□□□□ -0.25
LIMS1-215ENST00000544547 BTNL2Q9UIR0 455 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 KRBOX1C9JBD0 128 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 PRODHO43272 600 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 NAT2P11245 290 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 GNSP15586 552 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 BPIP17213 487 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 GPX2P18283 190 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 SLC22A10Q63ZE4 541 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 RPTNQ6XPR3 784 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 PEG10Q86TG7 708 aaKnown RBP13.46□□□□□ -0.25
LIMS1-215ENST00000544547 OAFQ86UD1 273 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 OR51L1Q8NGJ5 315 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 TSEN15Q8WW01 171 aaKnown RBP13.46□□□□□ -0.25
LIMS1-215ENST00000544547 LMLNQ96KR4 655 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 CAMK1GQ96NX5 476 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 GLS2Q9UI32 602 aa13.46□□□□□ -0.25
LIMS1-215ENST00000544547 M0R036 132 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 KRT33AO76009 404 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 PRAMEF12O95522 483 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 IFNA6P05013 189 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 GJA1P17302 382 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 SHC1P29353 583 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 MMP12P39900 470 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 MAGEA11P43364 429 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 RFX2P48378 723 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 TLE2Q04725 743 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 CRHR2Q13324 411 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF169Q14929 603 aaPredicted RBP13.46□□□□□ -0.26
LIMS1-215ENST00000544547 USF2Q15853 346 aaPredicted RBP13.46□□□□□ -0.26
LIMS1-215ENST00000544547 DUSP6Q16828 381 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF627Q7L945 461 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 TEX26Q8N6G2 289 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 TMIEQ8NEW7 156 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 OR4M1Q8NGD0 313 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 CHFRQ96EP1 664 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 RTP3Q9BQQ7 232 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 PLAGL1Q9UM63 463 aa13.46□□□□□ -0.26
LIMS1-215ENST00000544547 ZNFX1Q9P2E3 1918 aaKnown RBP13.46□□□□□ -0.26
LIMS1-215ENST00000544547 ATAD5Q96QE3 1844 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PI15O43692 258 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF821O75541 412 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CBSLP0DN79 551 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 SRCP12931 536 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 UQCRC2P22695 453 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CBSP35520 551 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 TAP2Q03519 686 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ELOAQ14241 798 aaKnown RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 Q6ZVL8 140 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 KCTD9Q7L273 389 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PRSS42Q7Z5A4 293 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 KCTD20Q7Z5Y7 419 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 SIAH3Q8IW03 269 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 GPALPP1Q8IXQ4 340 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ARMC10Q8N2F6 343 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 OR7G3Q8NG95 312 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 OR6M1Q8NGM8 313 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 GRHL3Q8TE85 626 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CHAC2Q8WUX2 184 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 KLK6Q92876 244 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 RIOK2Q9BVS4 552 aaKnown RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 TMEM27Q9HBJ8 222 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 AP1M2Q9Y6Q5 423 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 GOSR2O14653 212 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ACRP10323 421 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms