RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 DUSP5Q16690 384 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 DECR1Q16698 335 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 TMEM201Q5SNT2 666 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 SLC25A30Q5SVS4 291 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 MEDAGQ5VYS4 303 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 C12orf73Q69YU5 71 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 LAIR1Q6GTX8 287 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 MED25Q71SY5 747 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 PRSS41Q7RTY9 318 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 DEFB119Q8N690 84 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 MORN4Q8NDC4 146 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 OR4K5Q8NGD3 323 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 OR8J1Q8NGP2 316 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 SGCDQ92629 289 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 GGHQ92820 318 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 UBE2FQ969M7 185 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 RBM18Q96H35 190 aaKnown RBP13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 FUNDC2Q9BWH2 189 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 PRRG3Q9BZD7 231 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 ADAP2Q9NPF8 381 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 NECTIN3Q9NQS3 549 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 ENPP5Q9UJA9 477 aa13.79□□□□□ -0.2
ECHDC1-220ENST00000528402 REV3LO60673 3130 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 CCDC163A0A0D9SF12 145 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 STK25O00506 426 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 INMTO95050 263 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 NKX2-2O95096 273 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 ATE1O95260 518 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 ZBTB11O95625 1053 aaPredicted RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 BCL10O95999 233 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 FOSL2P15408 326 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 RPS4Y1P22090 263 aaKnown RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 MAOBP27338 520 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 HOXA6P31267 233 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 CNR2P34972 360 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 PTGER1P34995 402 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 GPR3P46089 330 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 GABRA4P48169 554 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 GP2P55259 537 aaKnown RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 HSD17B7P56937 341 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 RGS8P57771 180 aaPredicted RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 POU6F2P78424 691 aaPredicted RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 PIGFQ07326 219 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 STX4Q12846 297 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 SERTAD2Q14140 314 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 GRM7Q14831 915 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 NR1D2Q14995 579 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 OCLNQ16625 522 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 SMN1Q16637 294 aaKnown RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 DCST2Q5T1A1 773 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 LINC00299Q6ZSB3 139 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 AHSA2Q719I0 299 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 RANBP3LQ86VV4 465 aaPredicted RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 VRK2Q86Y07 508 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 VWA5B2Q8N398 1253 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 STX19Q8N4C7 294 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 COX18Q8N8Q8 333 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 OR5T3Q8NGG3 340 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 OR9A4Q8NGU2 314 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 LMF2Q9BU23 707 aaKnown RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 TEX12Q9BXU0 123 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 MAN2C1Q9NTJ4 1040 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 COLQQ9Y215 455 aaPredicted RBP13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 CDH23Q9H251 3354 aa13.78□□□□□ -0.2
ECHDC1-220ENST00000528402 SNTNA6NMZ2 147 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 H3BN98 237 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 SLC22A1O15245 554 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 BCAT2O15382 392 aaPredicted RBP13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 FOXS1O43638 330 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 NUDT21O43809 227 aaKnown RBP13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 FCMRO60667 390 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 POU1F1P28069 291 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 SOX18P35713 384 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 STAT5AP42229 794 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 SMSP52788 366 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 NFATC3Q12968 1075 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 TSPAN31Q12999 210 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 Q6ZPB1 254 aaPredicted RBP13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 ZER1Q7Z7L7 766 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 CCDC103Q8IW40 242 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 GALNT12Q8IXK2 581 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 TMEFF1Q8IYR6 380 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 RNF113BQ8IZP6 322 aaKnown RBP13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 TMEM52Q8NDY8 209 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 PIGXQ8TBF5 258 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 ACOT11Q8WXI4 607 aaPredicted RBP13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 DIO2Q92813 273 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 SLC35B4Q969S0 331 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 YIPF6Q96EC8 236 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 DTNBP1Q96EV8 351 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 MVB12AQ96EY5 273 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 AHCYL2Q96HN2 611 aaKnown RBP13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 MCHR1Q99705 422 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 WFDC6Q9BQY6 131 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 CDCA4Q9BXL8 241 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 RACGAP1Q9H0H5 632 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 ANKRA2Q9H9E1 313 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 SLC25A19Q9HC21 320 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 PRTFDC1Q9NRG1 225 aa13.77□□□□□ -0.21
ECHDC1-220ENST00000528402 STARD5Q9NSY2 213 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms