RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PORP16435 677 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 FPR1P21462 350 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 DNAJA1P31689 397 aaKnown RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 MAN2A2P49641 1150 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 XKP51811 444 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 PRKAG1P54619 331 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SHC2P98077 582 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 LASP1Q14847 261 aaKnown RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 INAQ16352 499 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 ZC3H12BQ5HYM0 836 aaKnown RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SLC44A2Q8IWA5 706 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 LRRC25Q8N386 305 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 ZBTB8BQ8NAP8 495 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 PSD4Q8NDX1 1056 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 GPR32P1Q8NGA4 272 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 PROX1Q92786 737 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 GIMAP5Q96F15 307 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 TCTN2Q96GX1 697 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 YIPF4Q9BSR8 244 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 RAB33BQ9H082 229 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 RUBCNLQ9H714 662 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SYNDIG1Q9H7V2 258 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 THSD1Q9NS62 852 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 KRT84Q9NSB2 600 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 NTMQ9P121 344 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 P2RX2Q9UBL9 471 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 TRPC4Q9UBN4 977 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 TESMINQ9Y4I5 508 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 DMXL1Q9Y485 3027 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 RALGAPA1Q6GYQ0 2036 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 C5orf58C9J3I9 102 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 FAM227AF5H4B4 570 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 WBP4O75554 376 aaKnown RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 GABARAPO95166 117 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 IFNA14P01570 189 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ITGAMP11215 1152 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 TLX1P31314 330 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 RYKP34925 604 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 OR1E2P47887 323 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ID2Q02363 134 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 EPS8Q12929 822 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 MAD2L1BPQ15013 274 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 PRAMEF17Q5VTA0 474 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 KDM4DQ6B0I6 523 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 OLIG3Q7RTU3 272 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ADCK1Q86TW2 530 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 PLXDC1Q8IUK5 500 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ARMC8Q8IUR7 673 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 FAM181AQ8N9Y4 354 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 RCBTB1Q8NDN9 531 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 NUP43Q8NFH3 380 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 OR7G2Q8NG99 324 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 OR9A4Q8NGU2 314 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 APH1BQ8WW43 257 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 YIPF6Q96EC8 236 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF347Q96SE7 839 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ZBTB20Q9HC78 741 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 THUMPD1Q9NXG2 353 aaKnown RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 KCNE3Q9Y6H6 103 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 SLC28A2O43868 658 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 FGF17O60258 216 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 SRPX2O60687 465 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 RDH16O75452 317 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 RPLP0P05388 317 aaKnown RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 CPMP14384 443 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 C21orf33P30042 268 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 GPLD1P80108 840 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 DUSP7Q16829 419 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 FAM111BQ6SJ93 734 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 P2RY8Q86VZ1 359 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 LGI4Q8N135 537 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 MFSD4AQ8N468 514 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 FBLIM1Q8WUP2 373 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 XAGE5Q8WWM1 108 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 GEMIN6Q8WXD5 167 aaKnown RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 LOXL4Q96JB6 756 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF300Q96RE9 604 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 EPYCQ99645 322 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 SPRTNQ9H040 489 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-230ENST00000488543 C3orf14Q9HBI5 128 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 PDE7BQ9NP56 450 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 RLIMQ9NVW2 624 aa11.36□□□□□ -0.59
HDAC6-230ENST00000488543 YKT6O15498 198 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 FOXS1O43638 330 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 NME6O75414 186 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 CHRM4P08173 479 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 CCDC159P0C7I6 412 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 FOLR1P15328 257 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 RAB38P57729 211 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 RPP38P78345 283 aaKnown RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 PRR5P85299 388 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 DAB2P98082 770 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 TOP3AQ13472 1001 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 PUM1Q14671 1186 aaKnown RBP eCLIP11.35□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF846Q147U1 533 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 PROX2Q3B8N5 592 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 FHL5Q5TD97 284 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 NIPAL1Q6NVV3 410 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 BHLHB9Q6PI77 547 aa11.35□□□□□ -0.59
HDAC6-230ENST00000488543 UTS2BQ765I0 119 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms