RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NCAPD2Q15021 1401 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ATP8B3O60423 1300 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 RGSL1A5PLK6 1076 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 E9PMD0 336 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 SGK494L7N484 410 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 PDLIM1O00151 329 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 LGALS8O00214 317 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 E2F3O00716 465 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 IMPA2O14732 288 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 SDC3O75056 442 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 PDE5AO76074 875 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 TOXO94900 526 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 AKR7A3O95154 331 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 NUDT14O95848 222 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 GOT2P00505 430 aaKnown RBP2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 HOXB7P09629 217 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 CCND2P30279 289 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 RFC2P35250 354 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 RGRP47804 291 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 GPC3P51654 580 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 MFAP2P55001 183 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 NOP14P78316 857 aaKnown RBP2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 HTD2P86397 168 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF85Q03923 595 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 SRYQ05066 204 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 DPYSQ14117 519 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ABRAXAS2Q15018 415 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 C14orf28Q4W4Y0 310 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ACER2Q5QJU3 275 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 SEL1L2Q5TEA6 688 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 STOX1Q6ZVD7 989 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 PAQR9Q6ZVX9 377 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 PRSS48Q7RTY5 328 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 HIPK1Q86Z02 1210 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 CENPSQ8N2Z9 138 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 BCORP1Q8N888 145 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 BEST4Q8NFU0 473 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 LHX4Q969G2 390 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 SLC25A36Q96CQ1 311 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 TBC1D31Q96DN5 1066 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 RBM18Q96H35 190 aaKnown RBP2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 TSPAN18Q96SJ8 248 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM173AQ9BQD7 235 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 WRAP53Q9BUR4 548 aaKnown RBP2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 CCSER1Q9C0I3 900 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 TSPY26PQ9H489 355 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ECT2Q9H8V3 914 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ACTR8Q9H981 624 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ESM1Q9NQ30 184 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM114A2Q9NRY5 505 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 ABCC13Q9NSE7 274 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 GDAP2Q9NXN4 497 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 PURGQ9UJV8 347 aaKnown RBP2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 RNF24Q9Y225 148 aa2.23□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM230AA0A1W2PPH8 454 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM168BA1KXE4 195 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 RNF222A6NCQ9 220 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 LRIT2A6NDA9 550 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 NPIPA2E9PIF3 369 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 F8WDY8 70 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 H0YL77 283 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 PDXKO00764 312 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 LRRTM2O43300 516 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 TYROBPO43914 113 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 TOM1L1O75674 476 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 NDUFA7O95182 113 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 APBB3O95704 486 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 IGHV3-9P01782 118 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 SLC35G4P0C7Q5 338 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 RRASP10301 218 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 TSPAN8P19075 237 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 POU3F4P49335 361 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ARHGDIAP52565 204 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 MTTPP55157 894 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 POLR2FP61218 127 aaKnown RBP2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 IGLV3-21P80748 117 aaPredicted RBP2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 MRPS6P82932 125 aaKnown RBP2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 BNIP1Q12981 228 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 LTB4RQ15722 352 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF79Q15937 498 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ADPRMQ3LIE5 342 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 C2orf83Q53S99 150 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 PRR5LQ6MZQ0 368 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF562Q6V9R5 426 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 P4HA3Q7Z4N8 544 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ARL14Q8N4G2 192 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 CERS5Q8N5B7 392 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 OR6T1Q8NGN1 323 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 CRYGNQ8WXF5 182 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 TAF4BQ92750 862 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 NUS1Q96E22 293 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 TRIM9Q9C026 710 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 RWDD1Q9H446 243 aaPredicted RBP2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 LIN28AQ9H9Z2 209 aaKnown RBP2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 VAT1LQ9HCJ6 419 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 CENPMQ9NSP4 180 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 HPF1Q9NWY4 346 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 DHRS4-AS1Q9P1J3 65 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ARMCX1Q9P291 453 aa2.22□□□□□ -2.05
CCDC88A-212ENST00000474059 ATXN10Q9UBB4 475 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms