RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 NEIL3Q8TAT5 605 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 NUDT8Q8WV74 236 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 SARAFQ96BY9 339 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 EFHD2Q96C19 240 aaPredicted RBP11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 ZBED6CLQ96FA7 236 aaPredicted RBP11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 PPP1R36Q96LQ0 422 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 LMF2Q9BU23 707 aaKnown RBP11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 OSBPL11Q9BXB4 747 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 TMBIM4Q9HC24 238 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 ACSS1Q9NUB1 689 aaPredicted RBP11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 KLRF1Q9NZS2 232 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 OR10H1Q9Y4A9 318 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 KLF2Q9Y5W3 355 aaPredicted RBP11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 CACNA1DQ01668 2161 aa11.64□□□□□ -0.55
PRPF40A-203ENST00000448428 SCAMP2O15127 329 aaKnown RBP11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 CLDN14O95500 239 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 LAMP1P11279 417 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 CYP4B1P13584 511 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 ELAVL4P26378 380 aaKnown RBP11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 ACVR2AP27037 513 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 HTR1EP28566 365 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 PTPN6P29350 595 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 IL12BP29460 328 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 GPC1P35052 558 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 KRT20P35900 424 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 HPCAL1P37235 193 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 MAGOHP61326 146 aaKnown RBP11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 EMX2Q04743 252 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 BST1Q10588 318 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 PMPCAQ10713 525 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 EFR3AQ14156 821 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 TOMM20Q15388 145 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 PDCD2Q16342 344 aaPredicted RBP11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 ZNF630Q2M218 657 aaPredicted RBP11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 WLSQ5T9L3 541 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 RTL6Q6ICC9 239 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 RIMKLAQ8IXN7 391 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 KRTCAP2Q8N6L1 136 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 ZFP28Q8NHY6 868 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 SDCCAG3Q96C92 435 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 TLCD1Q96CP7 247 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 AKTIPQ9H8T0 292 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 SERHLQ9NQF3 203 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 PNPOQ9NVS9 261 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 ALKBH4Q9NXW9 302 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 NTMQ9P121 344 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 HAO1Q9UJM8 370 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 MAPRE3Q9UPY8 281 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 SLC6A5Q9Y345 797 aa11.63□□□□□ -0.55
PRPF40A-203ENST00000448428 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 FIGNL2A6NMB9 653 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 SNPHO15079 494 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 CBR3O75828 277 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 SNUPNO95149 360 aaKnown RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 G6PDP11413 515 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 GABRA3P34903 492 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 RPL3P39023 403 aaKnown RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 MAP3K8P41279 467 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 SLC18A1P54219 525 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 PRKAG1P54619 331 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 GAS1P54826 345 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 NUP107P57740 925 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 CASP8Q14790 479 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 MLC1Q15049 377 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 ZNHIT3Q15649 155 aaPredicted RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 DECR1Q16698 335 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 SMU1Q2TAY7 513 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 EIPR1Q53HC9 387 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 WIPI1Q5MNZ9 446 aaPredicted RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 CPTPQ5TA50 214 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 YRDCQ86U90 279 aaKnown RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 NUP43Q8NFH3 380 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 CEP70Q8NHQ1 597 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 MGARPQ8TDB4 240 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 RNF138Q8WVD3 245 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 RND1Q92730 232 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 HOXB13Q92826 284 aaPredicted RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 COQ8BQ96D53 544 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 GIMAP5Q96F15 307 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 TIMP4Q99727 224 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 TTYH2Q9BSA4 534 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 Q9N2J8 555 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 EQTNQ9NQ60 294 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 SIRT3Q9NTG7 399 aaPredicted RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 COQ3Q9NZJ6 369 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 FLRT3Q9NZU0 649 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 CBLCQ9ULV8 474 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 EIF3LQ9Y262 564 aaKnown RBP11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 FAM215AQ9Y5M1 114 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 CACNA1CQ13936 2221 aa11.62□□□□□ -0.55
PRPF40A-203ENST00000448428 HCFC1P51610 2035 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 C15orf38-AP3S2A0A0A6YYH1 394 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 A0A1W2PRB8 838 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 GXYLT2A0PJZ3 443 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 TTC36A6NLP5 189 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 EMC8O43402 210 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 FADS1O60427 444 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 WDR1O75083 606 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 IL33O95760 270 aa11.61□□□□□ -0.55
PRPF40A-203ENST00000448428 GLI4P10075 376 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms