RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 KRT81Q14533 505 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 USF2Q15853 346 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 SPECC1LQ69YQ0 1117 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR4F3Q6IEY1 312 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR4A47Q6IF82 309 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 UQCC3Q6UW78 93 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF852Q6ZMS4 543 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NDUFAF7Q7L592 441 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PIM3Q86V86 326 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LGI2Q8N0V4 545 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 FBXL16Q8N461 479 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CPSF7Q8N684 471 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NRACQ8N912 160 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CNBD1Q8NA66 436 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 SLC44A5Q8NCS7 719 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ASB5Q8WWX0 329 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PELI1Q96FA3 418 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CHMP6Q96FZ7 201 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CERS2Q96G23 380 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LMLNQ96KR4 655 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 AMDHD1Q96NU7 426 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 MAP3K3Q99759 626 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CENPKQ9BS16 269 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 C20orf24Q9BUV8 137 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ROGDIQ9GZN7 287 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 SDCBP2Q9H190 292 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR52A5Q9H2C5 316 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CLK4Q9HAZ1 481 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 STOX2Q9P2F5 926 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 GGA2Q9UJY4 613 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PPRC1Q5VV67 1664 aaKnown RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 A0A1W2PPE3 182 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GOLGA6L4A6NEF3 574 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GAPDHSO14556 408 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 TIMM23O14925 209 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 HSPA12AO43301 675 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 SLC28A2O43868 658 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ZIC3O60481 467 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 RNASEH1O60930 286 aaKnown RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GLRA3O75311 464 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 STX11O75558 287 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ACP2P11117 423 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GSTM3P21266 225 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CASP14P31944 242 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CCKARP32238 428 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PLA2G16P53816 162 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 TSPAN5P62079 268 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CX3CL1P78423 397 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ID2Q02363 134 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ITIH4Q14624 930 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GANABQ14697 944 aaKnown RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 TAF13Q15543 124 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 BCL2A1Q16548 175 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CTF1Q16619 201 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 HSDL1Q3SXM5 330 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GGTA1PQ4G0N0 100 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ACSF3Q4G176 576 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 MIDNQ504T8 468 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PHLDA2Q53GA4 152 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 NDUFAF5Q5TEU4 345 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF776Q68DI1 518 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 SNRNP48Q6IEG0 339 aaKnown RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 RHBDD2Q6NTF9 364 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 HSDL2Q6YN16 418 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 MON1BQ7L1V2 547 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 H2BFWTQ7Z2G1 175 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 FJX1Q86VR8 437 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PRSS35Q8N3Z0 413 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ADAD2Q8NCV1 583 aaKnown RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PPFIBP2Q8ND30 876 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PROKR2Q8NFJ6 384 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 OR2L3Q8NG85 312 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 OR51G2Q8NGK0 314 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 SPATA22Q8NHS9 363 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 MARCH1Q8TCQ1 289 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 DTX3LQ8TDB6 740 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CACNG8Q8WXS5 425 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ALS2CR12Q96Q35 445 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CMKLR1Q99788 373 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 KXD1Q9BQD3 176 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CCDC3Q9BQI4 270 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PARD6BQ9BYG5 372 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 SHCBP1LQ9BZQ2 653 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 OR2AG1Q9H205 316 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GAL3ST2Q9H3Q3 398 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CENPHQ9H3R5 247 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF665Q9H7R5 613 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 MTHFD2LQ9H903 347 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF275Q9NSD4 429 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 C20orf96Q9NUD7 363 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF701Q9NV72 531 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 TECRQ9NZ01 308 aaKnown RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 PSMC3IPQ9P2W1 217 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 UXTQ9UBK9 157 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-204ENST00000399489 ENPP5Q9UJA9 477 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 CFL2Q9Y281 166 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 YIPF1Q9Y548 306 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GLI2P10070 1586 aa3.69□□□□□ -1.82
HMGB1-204ENST00000399489 GOLGA8QA0A0J9YX86 632 aa3.68□□□□□ -1.82
HMGB1-204ENST00000399489 MED19A0JLT2 244 aaPredicted RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms