RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 M0R233 179 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 BMXP51813 675 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 ACTC1P68032 377 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 ACTA1P68133 377 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 AWAT2Q6E213 333 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 TRAPPC6BQ86SZ2 158 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 GSTO2Q9H4Y5 243 aa17.7■□□□□ 0.42
SMARCC1-201ENST00000254480 TMEM225BP0DP42 221 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 ZNF43P17038 809 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 SDR9C7Q8NEX9 313 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 FUNDC2Q9BWH2 189 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 NXF5Q9H1B4 397 aaKnown RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 IL17CQ9P0M4 197 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 PCDHGA7Q9Y5G6 932 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 A0A0G2JPF8 293 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 A0A1B0GVC2 190 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 HNRNPCL3B7ZW38 293 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 F5H5K5 113 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 CAPNS1P04632 268 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 HNRNPCL4P0DMR1 293 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 UBE2NP61088 152 aaKnown RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 TLE3Q04726 772 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 MALLQ13021 153 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 EIF2S3LQ2VIR3 472 aaKnown RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 PRAMEF8Q5VWM4 474 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 PRAMEF7Q5VXH5 474 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 HOXB13Q92826 284 aaPredicted RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 METTL2AQ96IZ6 378 aaKnown RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 HS6ST2Q96MM7 605 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 MMP27Q9H306 513 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 KLHL9Q9P2J3 617 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 SUSD2Q9UGT4 822 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 ERVK-19Q9WJR5 959 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 LATS1O95835 1130 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 MFSD13AQ14CX5 517 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 SNNO75324 88 aaPredicted RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 CD79AP11912 226 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 DRD5P21918 477 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 IRF4Q15306 451 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 LIX1LQ8IVB5 337 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 OR6C4Q8NGE1 309 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 CDS1Q92903 461 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 MEIS3P1A6NDR6 274 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 F5H0A9 414 aaPredicted RBP17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 ZNF217O75362 1048 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 GYPBP06028 91 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 RSU1Q15404 277 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 NKPD1Q17RQ9 610 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 SCML4Q8N228 414 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 SYT4Q9H2B2 425 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 KCNIP3Q9Y2W7 256 aa17.69■□□□□ 0.42
SMARCC1-201ENST00000254480 STK11Q15831 433 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 EIF5AL1Q6IS14 154 aaKnown RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 IL17RCQ8NAC3 791 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 MTHFD2LQ9H903 347 aaPredicted RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 DNAJC25-GNG10A0A024R161 153 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 H7C417 338 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 PRAMEF2O60811 474 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 APBB3O95704 486 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 DCKP27707 260 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 MARCH8Q5T0T0 291 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 TCEAL8Q8IYN2 117 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 DTWD1Q8N5C7 304 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 ACVR1CQ8NER5 493 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 DDIT4LQ96D03 193 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 SGCZQ96LD1 299 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 KLF16Q9BXK1 252 aaPredicted RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 RFXAPO00287 272 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 KDELC1Q6UW63 502 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 MAMDC2Q7Z304 686 aaPredicted RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 UEVLDQ8IX04 471 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 SCGB1C1Q8TD33 95 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 URM1Q9BTM9 101 aaKnown RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 DMRT3Q9NQL9 472 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 STUB1Q9UNE7 303 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 NAALAD2Q9Y3Q0 740 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 NKX2-5P52952 324 aaPredicted RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 FXYD4P59646 89 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 PIP5KL1Q5T9C9 394 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 RPL13AP3Q6NVV1 102 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 LRRN1Q6UXK5 716 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 NECAB3Q96P71 396 aaPredicted RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 ABCG5Q9H222 651 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 SYPP08247 313 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 MAP2K3P46734 347 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 RPL19P84098 196 aaKnown RBP17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 RCAN2Q14206 197 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 TRIM46Q7Z4K8 759 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 NECTIN4Q96NY8 510 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 R3HDMLQ9H3Y0 253 aa17.68■□□□□ 0.42
SMARCC1-201ENST00000254480 LCKP06239 509 aa17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 SLC39A11Q8N1S5 342 aa17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 CXCL16Q9H2A7 254 aa17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 PTRH2Q9Y3E5 179 aaKnown RBP17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 DCDC2BA2VCK2 349 aa17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 ZNF705EA8MWA4 302 aaPredicted RBP17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 PSMB10P40306 273 aa17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 CDK3Q00526 305 aa17.67■□□□□ 0.42
SMARCC1-201ENST00000254480 CPOQ8IVL8 374 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms