RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CBR4Q8N4T8 237 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ZNF781Q8N8C0 355 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PPTC7Q8NI37 304 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 KLHDC7BQ96G42 594 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ATP5SQ99766 215 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 SEMA4CQ9C0C4 833 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR52A5Q9H2C5 316 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FKRPQ9H9S5 495 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 WDR6Q9NNW5 1121 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 KCND1Q9NSA2 647 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NINJ2Q9NZG7 142 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NEO1Q92859 1461 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 HBE1P02100 147 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 C1GALT1C1LP0DN25 315 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 UBL4AP11441 157 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TIMP2P16035 220 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PGCP20142 388 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 CD34P28906 385 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 GABRA4P48169 554 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 RPS21P63220 83 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 GANABQ14697 944 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TMEM97Q5BJF2 176 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 CXCL17Q6UXB2 119 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MARCH9Q86YJ5 346 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 AQP11Q8NBQ7 271 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 LMX1AQ8TE12 382 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TRMT2BQ96GJ1 504 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MAELQ96JY0 434 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FAM84BQ96KN1 310 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PORCNQ9H237 461 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 CACFD1Q9UGQ2 172 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PTBP2Q9UKA9 531 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ABCA7Q8IZY2 2146 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 BMPR1BO00238 502 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FAAHO00519 579 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 SNAPINO95295 136 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 CDK6Q00534 326 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MEF2DQ14814 521 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FXNQ16595 210 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 CYP27C1Q4G0S4 372 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FAM205BPQ63HN1 556 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TANGO2Q6ICL3 276 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 SYT13Q7L8C5 426 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 CFAP52Q8N1V2 620 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 C11orf42Q8N5U0 333 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR10G2Q8NGC3 310 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR4K14Q8NGD5 310 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR51T1Q8NGJ9 327 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR6K2Q8NGY2 324 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR4A16Q8NH70 328 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ZFAND1Q8TCF1 268 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NPRL2Q8WTW4 380 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 LRRN4Q8WUT4 740 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TANKQ92844 425 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 SLAMF9Q96A28 289 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FOXN4Q96NZ1 517 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 INTS14Q96SY0 518 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MBOAT4Q96T53 435 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PKP2Q99959 881 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 DHX33Q9H6R0 707 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 RALYQ9UKM9 306 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 SERTM2A0A1B0GWG4 89 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 LGI1O95970 557 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FOXN2P32314 431 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 LSSP48449 732 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 WNT3AP56704 352 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TAS2R46P59540 309 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 LEG1Q6P5S2 330 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MAMDC4Q6UXC1 1216 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 RNF111Q6ZNA4 994 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FAM183BPQ6ZVS7 135 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PGAP1Q75T13 922 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NLRC3Q7RTR2 1065 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 HS3ST5Q8IZT8 346 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NEIL3Q8TAT5 605 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 COL21A1Q96P44 957 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NKX3-1Q99801 234 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 NICN1Q9BSH3 213 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 RNF38Q9H0F5 515 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 FER1L4A9Z1Z3 1794 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MUC4Q99102 2169 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TRBV23OR9-2A0A075B6M9 112 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR6C65A6NJZ3 312 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 B4GALT2O60909 372 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PIRTP0C851 137 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 SNU13P55769 128 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PLCXD2Q0VAA5 305 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ACACAQ13085 2346 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 HES1Q14469 280 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 HNF4GQ14541 408 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ZNF704Q6ZNC4 412 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 RBM12BQ8IXT5 1001 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR6N2Q8NGY6 317 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 UBALD1Q8TB05 177 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 ZNF596Q8TC21 504 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 MRPL38Q96DV4 380 aaKnown RBP5.75□□□□□ -1.49
SCN1A-212ENST00000636194 PIGQQ9BRB3 760 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 TIMM29Q9BSF4 260 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 OR2B2Q9GZK3 357 aa5.75□□□□□ -1.49
SCN1A-212ENST00000636194 DCSTAMPQ9H295 470 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms