RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 PCM1Q15154 2024 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 SEC23BQ15437 767 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 ELP2Q6IA86 826 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 LIN54Q6MZP7 749 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 OR8K3Q8NH51 312 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 GIMAP1Q8WWP7 306 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 KLK6Q92876 244 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 OSTF1Q92882 214 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 OTUB2Q96DC9 234 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 CAMK1GQ96NX5 476 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 SLC22A12Q96S37 553 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 RAD9AQ99638 391 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 MVB12BQ9H7P6 319 aa10.43□□□□□ -0.74
CLN3-244ENST00000636147 TEX10Q9NXF1 929 aaPredicted RBP10.43□□□□□ -0.74
CLN3-244ENST00000636147 PLA2G10O15496 165 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 HRO43593 1189 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 RGS9O75916 674 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 ZNF8P17098 575 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 POU3F3P20264 500 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 MMP11P24347 488 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GABRA5P31644 462 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 SOX2P48431 317 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 KIAA1024LP59773 190 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 AP3S2P59780 193 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 RAB40BQ12829 278 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 HYAL4Q2M3T9 481 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 HSD17B12Q53GQ0 312 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 FAM46CQ5VWP2 391 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 PGBD2Q6P3X8 592 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 TMED4Q7Z7H5 227 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 RDH10Q8IZV5 341 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 OR2T33Q8NG76 320 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 UBTD2Q8WUN7 234 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 ZNF480Q8WV37 535 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 UPRTQ96BW1 309 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 RC3H2Q9HBD1 1191 aaKnown RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 PRDM9Q9NQV7 894 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 IRAK3Q9Y616 596 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 A0A1W2PPL8 197 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 OR6C74A6NCV1 312 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 H3BUI4 141 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 PIP5K1CO60331 668 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 TRIM3O75382 744 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 SPDEFO95238 335 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GYPBP06028 91 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 ACP2P11117 423 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 SPTBP11277 2137 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 POLR2CP19387 275 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 PUDPQ08623 228 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 TCTN3Q6NUS6 607 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 METTL2BQ6P1Q9 378 aaKnown RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 IDO2Q6ZQW0 420 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 ESPNLQ6ZVH7 1005 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GNPDA2Q8TDQ7 276 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 C1QTNF6Q9BXI9 259 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 NT5DC2Q9H857 520 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 DIMT1Q9UNQ2 313 aaKnown RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 ARPC1BO15143 372 aaKnown RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 LEFTY1O75610 366 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 TCRBP04435 133 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 SNRPBP14678 240 aaKnown RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 EDNRAP25101 427 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GZMMP51124 257 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GRK1Q15835 563 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GGTA1PQ4G0N0 100 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 FNDC3BQ53EP0 1204 aaKnown RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 FAM27D1Q5T7N8 215 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 NDUFAF5Q5TEU4 345 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 SPRYD7Q5W111 196 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 RTL4Q6ZR62 310 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 PRSS45Q7RTY3 260 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 SYT9Q86SS6 491 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 GPR135Q8IZ08 494 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 ZBTB44Q8NCP5 570 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 FBXO15Q8NCQ5 510 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 TFGQ92734 400 aaPredicted RBP10.42□□□□□ -0.74
CLN3-244ENST00000636147 ZNF354BQ96LW1 612 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 TMEM43Q9BTV4 400 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 ALG8Q9BVK2 526 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 KATNBL1Q9H079 304 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 PPA2Q9H2U2 334 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 DMRT3Q9NQL9 472 aa10.42□□□□□ -0.74
CLN3-244ENST00000636147 LTBP3Q9NS15 1303 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 LY75O60449 1722 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 SLC16A5O15375 505 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 NARSO43776 548 aaKnown RBP10.41□□□□□ -0.74
CLN3-244ENST00000636147 RPN2P04844 631 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 S100A9P06702 114 aaKnown RBP10.41□□□□□ -0.74
CLN3-244ENST00000636147 FURINP09958 794 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 RAB3BP20337 219 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 IL32P24001 234 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 EVX1P49640 407 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TAP2Q03519 686 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 KCNC3Q14003 757 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 SLC9A5Q14940 896 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 PIP5KL1Q5T9C9 394 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ZBTB37Q5TC79 503 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 PYHIN1Q6K0P9 492 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 BRAT1Q6PJG6 821 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 C3P1Q6ZMU1 363 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms