RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ATG4BQ9Y4P1 393 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 HSPE1-MOB4S4R3N1 261 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 PRAMEF25A6NGN4 478 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 DNAJB6O75190 326 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 TSPAN19P0C672 248 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 POU3F3P20264 500 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SCN1BQ07699 218 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 LTB4RQ15722 352 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 FAM205BPQ63HN1 556 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 RRM2BQ7LG56 351 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 IQCF1Q8N6M8 205 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 B3GNT7Q8NFL0 401 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 ZG16BQ96DA0 208 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 CCDC32Q9BV29 185 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SLC22A4Q9H015 551 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 ATP13A2Q9NQ11 1180 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 ASIC5Q9NY37 505 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 GPR34Q9UPC5 381 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 PLXND1Q9Y4D7 1925 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 POLR1CO15160 346 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 HYAL3O43820 417 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 CDC123O75794 336 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 RPS21P63220 83 aaKnown RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SIM1P81133 766 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 HEPACAMQ14CZ8 416 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 COL13A1Q5TAT6 717 aaPredicted RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 FAM71E1Q6IPT2 247 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 METTL2BQ6P1Q9 378 aaKnown RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 SYNPOQ8N3V7 929 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 FAM3CQ92520 227 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 NXF2Q9GZY0 626 aaKnown RBP13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 DOCK8Q8NF50 2099 aa13.64□□□□□ -0.23
SHROOM1-208ENST00000617339 A0A0B4J293 547 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 C1orf226A1L170 272 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 K7EQS6 105 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 PRKNO60260 465 aaPredicted RBP13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 TBX6O95947 436 aaPredicted RBP13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 CEACAM5P06731 702 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 IGFALSP35858 605 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 BCL6P41182 706 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 CSNK1G2P78368 415 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 HYAL2Q12891 473 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 DOC2BQ14184 412 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 ZNF267Q14586 743 aaPredicted RBP13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 ZNF79Q15937 498 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 TOR1AIP1Q5JTV8 583 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 ERICH5Q6P6B1 374 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 ZC3H14Q6PJT7 736 aaKnown RBP13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 KLHDC8AQ8IYD2 350 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 APOOQ9BUR5 198 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 BARHL1Q9BZE3 327 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 SYNPO2LQ9H987 977 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 I3L521 148 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 TSPAN4O14817 238 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 KLHL18O94889 574 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 ADRA2AP08913 450 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 GLRX5Q86SX6 157 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 METTL27Q8N6F8 245 aaPredicted RBP13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 IL17RCQ8NAC3 791 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 TCEAL2Q9H3H9 227 aaPredicted RBP13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 PCDHGB3Q9Y5G1 929 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 PCDHGB2Q9Y5G2 931 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 GRXCR2A6NFK2 248 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 B4DXG7 233 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 CLEC2LP0C7M8 214 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 TMEM52BQ4KMG9 183 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 CLEC12AQ5QGZ9 265 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 ZNF793Q6ZN11 406 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 LSMEM1Q8N8F7 131 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 OR4M1Q8NGD0 313 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 OR2A1Q8NGT9 310 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 UBE2E3Q969T4 207 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 RGMAQ96B86 450 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 MTERF3Q96E29 417 aa13.63□□□□□ -0.23
SHROOM1-208ENST00000617339 CH25HO95992 272 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 C5AR1P21730 350 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 AVPR1BP47901 424 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 MRPL19P49406 292 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 TOR2AQ5JU69 321 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 PLET1Q6UQ28 207 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 Q6ZS52 159 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 NUDT13Q86X67 352 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 LRRC56Q8IYG6 542 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 TDHQ8IZJ6 230 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 OR8H3Q8N146 312 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 OR1E3Q8WZA6 343 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 RNF121Q9H920 327 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 POLMQ9NP87 494 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 SEMA3GQ9NS98 782 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 KCNE3Q9Y6H6 103 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 MTCL1Q9Y4B5 1905 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 TRBV4-1A0A0J9YWV2 114 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 FABP12A6NFH5 140 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 RNASET2O00584 256 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 IFNW1P05000 195 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 IL1RNP18510 177 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 DPTQ07507 201 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 C6orf132Q5T0Z8 1188 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 SLC34A3Q8N130 599 aa13.62□□□□□ -0.23
SHROOM1-208ENST00000617339 NLGN4YQ8NFZ3 816 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms