RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SHHQ15465 462 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 MAPK11Q15759 364 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 CA9Q16790 459 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 FAM83EQ2M2I3 478 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 KRTAP27-1Q3LI81 207 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 BCL7AQ4VC05 210 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 GPAT3Q53EU6 434 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 TMEM41BQ5BJD5 291 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 C10orf120Q5SQS8 335 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 SULT1C3Q6IMI6 304 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 CASC4Q6P4E1 433 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 DEGS2Q6QHC5 323 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 FAM198BQ6UWH4 519 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 WDR88Q6ZMY6 472 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 NOTCH2NLQ7Z3S9 236 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 SERINC5Q86VE9 423 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 TPRA1Q86W33 373 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 ZDHHC21Q8IVQ6 265 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 PYROXD2Q8N2H3 581 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 RAB42Q8N4Z0 105 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 COMMD1Q8N668 190 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 FADS6Q8N9I5 356 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 THAP8Q8NA92 274 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 OR56B1Q8NGI3 324 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 OCC1Q8TAD7 63 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 MRGPRDQ8TDS7 321 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 TSEN15Q8WW01 171 aaKnown RBP4.32□□□□□ -1.72
SMAD4-216ENST00000593223 CKAP2Q8WWK9 683 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 SELENOMQ8WWX9 145 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 DTD2Q96FN9 168 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 GMPPAQ96IJ6 420 aaPredicted RBP4.32□□□□□ -1.72
SMAD4-216ENST00000593223 MAGED4Q96JG8 741 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 PRAC1Q96KF2 57 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 LRRC3BQ96PB8 259 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 KLHL5Q96PQ7 755 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF607Q96SK3 696 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 NTMT1Q9BV86 223 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 UBQLN3Q9H347 655 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 METTL7AQ9H8H3 244 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 RNF150Q9ULK6 438 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 TMED3Q9Y3Q3 217 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 MFHAS1Q9Y4C4 1052 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 DMDP11532 3685 aa4.32□□□□□ -1.72
SMAD4-216ENST00000593223 USP24Q9UPU5 2620 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 TONSLQ96HA7 1378 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MYO15AQ9UKN7 3530 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 SLCO1B7G3V0H7 640 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ALOX15BO15296 676 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ST8SIA3O43173 380 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 DFFBO76075 338 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 AP2A2O94973 939 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MOCS3O95396 460 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 SERPINA3P01011 423 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 IL1BP01584 269 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 IGHV2-70P01814 119 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 APOA1P02647 267 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 RAF1P04049 648 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 CRYGCP07315 174 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 FAM157CP0CG43 387 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 IGHV4-31P0DP07 118 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 HAPLN1P10915 354 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ODC1P11926 461 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF26P17031 533 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PRKACAP17612 351 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 FUT1P19526 365 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 NCF2P19878 526 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 NKX2-1P43699 371 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 SLC11A1P49279 550 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 SERPINH1P50454 418 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MAZP56270 477 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 RPL23AP62750 156 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MAT1AQ00266 395 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 LIPEQ05469 1076 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 RBPJQ06330 500 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 DRP2Q13474 957 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 TEAD2Q15562 447 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 SSX2Q16385 188 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PDK4Q16654 411 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 UGCGQ16739 394 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MTHFSDQ2M296 383 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 VWC2Q2TAL6 325 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MPPE1Q53F39 396 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PRAMEF8Q5VWM4 474 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ATL3Q6DD88 541 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PWWP2BQ6NUJ5 590 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 BHLHB9Q6PI77 547 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 TRMT10CQ7L0Y3 403 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 FAM228AQ86W67 206 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 CENPLQ8N0S6 344 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 NECAB1Q8N987 351 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PRSS33Q8NF86 280 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 OR13C3Q8NGS6 347 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 OR2T11Q8NH01 316 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 OR2T3Q8NH03 318 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 OR52N5Q8NH56 324 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 RAB3IL1Q8TBN0 382 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PDCD6IPQ8WUM4 868 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MITD1Q8WV92 249 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 OR1E3Q8WZA6 343 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 MOB3AQ96BX8 217 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms