RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SAMHD1Q9Y3Z3 626 aaKnown RBP9.8□□□□□ -0.84
SS18-217ENST00000580958 TESMINQ9Y4I5 508 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 ENPP4Q9Y6X5 453 aa9.8□□□□□ -0.84
SS18-217ENST00000580958 EXPH5Q8NEV8 1989 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 GXYLT2A0PJZ3 443 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 EIF4E1BA6NMX2 242 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 EFCAB7A8K855 629 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 A8MUA0 341 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 J3KTA2 159 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 SCRG1O75711 98 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 SNAP29O95721 258 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 HPRP00739 348 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 IFNW1P05000 195 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 UBTFL6P0CB48 400 aaPredicted RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 THRBP10828 461 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 ITGA2P17301 1181 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 TNNI3P19429 210 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 PRKACGP22612 351 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 ACP1P24666 158 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 RRM2P31350 389 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 CSTF2P33240 577 aaKnown RBP eCLIP9.79□□□□□ -0.84
SS18-217ENST00000580958 GALNSP34059 522 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 MAP3K8P41279 467 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 EMDP50402 254 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 PGDP52209 483 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 EFNA3P52797 238 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 SPIBQ01892 262 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 BIKQ13323 160 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 TRA2AQ13595 282 aaKnown RBP eCLIP9.79□□□□□ -0.84
SS18-217ENST00000580958 PDK3Q15120 406 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 MINDY4Q4G0A6 757 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 NHSL2Q5HYW2 709 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 MLIPQ5VWP3 458 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 TYW3Q6IPR3 259 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 RHBDD2Q6NTF9 364 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 PWWP2BQ6NUJ5 590 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 FRRS1Q6ZNA5 592 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 COMTD1Q86VU5 262 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 LACC1Q8IV20 430 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 CHERPQ8IWX8 916 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 PRSS58Q8IYP2 241 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 MARVELD2Q8N4S9 558 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 COX18Q8N8Q8 333 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 OR4D11Q8NGI4 311 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 GPR151Q8TDV0 419 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 RASSF5Q8WWW0 418 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 HOXB13Q92826 284 aaPredicted RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 CLIP3Q96DZ5 547 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 ZNF354BQ96LW1 612 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 CNBD2Q96M20 576 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 ZNF347Q96SE7 839 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 STACQ99469 402 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 EPYCQ99645 322 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 RBM4BQ9BQ04 359 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 ADI1Q9BV57 179 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 CNPPD1Q9BV87 410 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 RBM4Q9BWF3 364 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 OSBPL10Q9BXB5 764 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 QRSL1Q9H0R6 528 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 APMAPQ9HDC9 416 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 MKKSQ9NPJ1 570 aaPredicted RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 PNO1Q9NRX1 252 aaKnown RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 SLC22A11Q9NSA0 550 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 SMPD3Q9NY59 655 aaPredicted RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 USE1Q9NZ43 259 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 HEMK1Q9Y5R4 338 aaPredicted RBP9.79□□□□□ -0.84
SS18-217ENST00000580958 WDR87Q6ZQQ6 2873 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 DSPPQ9NZW4 1301 aa9.79□□□□□ -0.84
SS18-217ENST00000580958 IGKV3D-11A0A0A0MRZ8 115 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 C17orf105B2RV13 164 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 M0R3H8 397 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 TNFRSF11BO00300 401 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 CDX4O14627 284 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 ADAMDEC1O15204 470 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 HS6ST1O60243 411 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 FCMRO60667 390 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 DPM1O60762 260 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 DNAJB5O75953 348 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 NKX2-2O95096 273 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 EPPINO95925 133 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 LGI1O95970 557 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 CLPSP04118 112 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 ALPLP05186 524 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 GP1BAP07359 652 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 PABPC4LP0CB38 370 aaKnown RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 CD59P13987 128 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 RHCEP18577 417 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 GABRA3P34903 492 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 CDH12P55289 794 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 POU6F2P78424 691 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 PPP2R2BQ00005 443 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 RHAGQ02094 409 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 ZFP36L1Q07352 338 aaKnown RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 FUT7Q11130 342 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 MERTKQ12866 999 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 GK3PQ14409 553 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 GPR68Q15743 365 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 ZIK1Q3SY52 487 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 ZNF311Q5JNZ3 666 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 DCST2Q5T1A1 773 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms