RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF578Q96N58 590 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 LMF2Q9BU23 707 aaKnown RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 MUC13Q9H3R2 512 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 DCAF13Q9NV06 445 aaKnown RBP23.29■■□□□ 1.32
SHMT1-207ENST00000580002 GIN1Q9NXP7 522 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 P2RX2Q9UBL9 471 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 KLK13Q9UKR3 277 aa23.29■■□□□ 1.32
SHMT1-207ENST00000580002 H3BNX3 289 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 NKX2-2O95096 273 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 C8BP07358 591 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 RHDQ02161 417 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 CHRNEQ04844 493 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 ADGRG5Q8IZF4 528 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 TAMM41Q96BW9 452 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 SEPHS2Q99611 448 aa23.28■■□□□ 1.32
SHMT1-207ENST00000580002 TREX2Q9BQ50 279 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-207ENST00000580002 PCSK5Q92824 1860 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 LOC102723996A0A087X1L8 192 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 CDC14CA4D256 554 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 SOCS6O14544 535 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 ASNA1O43681 348 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 PRKD3O94806 890 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 IGKV1D-16P01601 117 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 OTX2P32243 289 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 FOXC1Q12948 553 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 DTX1Q86Y01 620 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 SMYD1Q8NB12 490 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 MORN4Q8NDC4 146 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 RSRC1Q96IZ7 334 aaKnown RBP23.27■■□□□ 1.32
SHMT1-207ENST00000580002 SLC38A1Q9H2H9 487 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 S100A14Q9HCY8 104 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 AQP12BA6NM10 295 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 C5orf58C9J3I9 102 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 DYRK3O43781 588 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 GMNNO75496 209 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 MT-ND1P03886 318 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 CLCN2P51788 898 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 SRSF6Q13247 344 aaKnown RBP23.27■■□□□ 1.32
SHMT1-207ENST00000580002 IL10RAQ13651 578 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 ZCCHC12Q6PEW1 402 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 C16orf62Q7Z3J2 963 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 PPP1R32Q7Z5V6 425 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 VTCN1Q7Z7D3 282 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 AQP12AQ8IXF9 295 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 COX18Q8N8Q8 333 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 B3GNT7Q8NFL0 401 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 ADIPOR1Q96A54 375 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 RMND5BQ96G75 393 aaPredicted RBP23.27■■□□□ 1.32
SHMT1-207ENST00000580002 GAL3ST4Q96RP7 486 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 SDF2Q99470 211 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 LPAR4Q99677 370 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 B3GNT4Q9C0J1 378 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 NXF5Q9H1B4 397 aaKnown RBP23.27■■□□□ 1.32
SHMT1-207ENST00000580002 WDR70Q9NW82 654 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 MKLN1Q9UL63 735 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 AK5Q9Y6K8 562 aa23.27■■□□□ 1.32
SHMT1-207ENST00000580002 IGHV1-45A0A0A0MS14 117 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 NPIPA5A0A0B4J1W7 369 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 NPIPA7E9PJI5 369 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 STAMBPO95630 424 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 ZNF682O95780 498 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 NPIPA8P0DM63 369 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 COX6A1P12074 109 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 RFX3P48380 749 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 RNF144AP50876 292 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-207ENST00000580002 RPS15P62841 145 aaKnown RBP23.26■■□□□ 1.31
SHMT1-207ENST00000580002 CCDC80Q76M96 950 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 OR11G2Q8NGC1 345 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 THAP3Q8WTV1 239 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-207ENST00000580002 STACQ99469 402 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 DUSP22Q9NRW4 184 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 AURKCQ9UQB9 309 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 ANGPT4Q9Y264 503 aa23.26■■□□□ 1.31
SHMT1-207ENST00000580002 GPR55Q9Y2T6 319 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-207ENST00000580002 CENPVL1A0A0U1RR11 272 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 TRABD2BA6NFA1 517 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 DUXAA6NLW8 204 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 ATP6V1G2O95670 118 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 MMP11P24347 488 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 ANXA11P50995 505 aaKnown RBP23.25■■□□□ 1.31
SHMT1-207ENST00000580002 SLC26A5P58743 744 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 EBPQ15125 230 aaKnown RBP23.25■■□□□ 1.31
SHMT1-207ENST00000580002 ARHGAP11BQ3KRB8 267 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 CYBRD1Q53TN4 286 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 DCST2Q5T1A1 773 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 TRIM15Q9C019 465 aa23.25■■□□□ 1.31
SHMT1-207ENST00000580002 C19orf25Q9UFG5 118 aaPredicted RBP23.25■■□□□ 1.31
SHMT1-207ENST00000580002 KCNK2O95069 426 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 TNFRSF1BP20333 461 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 MAGEA8P43361 318 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 RCN1Q15293 331 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 ATAD3BQ5T9A4 648 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 FRRS1Q6ZNA5 592 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 COMTD1Q86VU5 262 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 COL21A1Q96P44 957 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 SEMA4CQ9C0C4 833 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 EXD2Q9NVH0 621 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 THUMPD1Q9NXG2 353 aaKnown RBP23.24■■□□□ 1.31
SHMT1-207ENST00000580002 PRODH2Q9UF12 536 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 SPTBN4Q9H254 2564 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms