RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 KCNJ16Q9NPI9 418 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 ACTR3BQ9P1U1 418 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 LOC102723996A0A087X1L8 192 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 URADA6NGE7 173 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 PRRG2O14669 202 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 TPOP07202 933 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 FHP07954 510 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 BCKDHAP12694 445 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 PEX2P28328 305 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 CHRNB4P30926 498 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 GSK3BP49841 420 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 HNRNPFP52597 415 aaKnown RBP11.59□□□□□ -0.55
SHMT2-230ENST00000557427 DGKQP52824 942 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 HYAL2Q12891 473 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 DOC2AQ14183 400 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 C10orf62Q5T681 223 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-230ENST00000557427 LPCAT4Q643R3 524 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 SPINK14Q6IE38 97 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 NANOGP8Q6NSW7 305 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 SLC2A7Q6PXP3 512 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 DLEU7Q6UYE1 221 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 MSANTD1Q6ZTZ1 278 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 ANKRD37Q7Z713 158 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 CCDC71Q8IV32 467 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-230ENST00000557427 BEST3Q8N1M1 668 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 KRT78Q8N1N4 520 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 OR8J3Q8NGG0 315 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 WDR20Q8TBZ3 569 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 ASB5Q8WWX0 329 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 TBC1D20Q96BZ9 403 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 WDR34Q96EX3 536 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 IMMP1LQ96LU5 166 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 SLC6A16Q9GZN6 736 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 AICDAQ9GZX7 198 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 NANOGQ9H9S0 305 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 BRF2Q9HAW0 419 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 BATF3Q9NR55 127 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 ANKRD10Q9NXR5 420 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 C19orf25Q9UFG5 118 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-230ENST00000557427 AP3M1Q9Y2T2 418 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 AP4S1Q9Y587 144 aa11.59□□□□□ -0.55
SHMT2-230ENST00000557427 ANKDD1BA6NHY2 528 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 PRMT3O60678 531 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 SH3BGRLO75368 114 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 KCNH1O95259 989 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 SMIM10L1P0DMW3 83 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 ICAM2P13598 275 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 CD22P20273 847 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 ATP6V1B2P21281 511 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 CD96P40200 585 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 SKP1P63208 163 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 BTG2P78543 158 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 LIPEQ05469 1076 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 TUBA3CQ13748 450 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 PTGR1Q14914 329 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 HIST2H2ACQ16777 129 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-230ENST00000557427 BTBD16Q32M84 506 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 SFT2D3Q587I9 215 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 FCRLBQ6BAA4 426 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 HIST2H2AA3Q6FI13 130 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 TUBA3EQ6PEY2 450 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-230ENST00000557427 ZZZ3Q8IYH5 903 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 PLPP5Q8NEB5 264 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 TSLPQ969D9 159 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 TESCQ96BS2 214 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 RMND5BQ96G75 393 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-230ENST00000557427 SMIM10Q96HG1 83 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 PTCHD1Q96NR3 888 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 BTBD9Q96Q07 612 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 CGREF1Q99674 301 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 KCTD14Q9BQ13 255 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-230ENST00000557427 CLEC4MQ9H2X3 399 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-230ENST00000557427 EHD1Q9H4M9 534 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 ALG2Q9H553 416 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 RASSF1Q9NS23 344 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 LANCL2Q9NS86 450 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 ARMC1Q9NVT9 282 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 CNOT11Q9UKZ1 510 aaKnown RBP11.58□□□□□ -0.56
SHMT2-230ENST00000557427 DTNAQ9Y4J8 743 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 PCDHGA11Q9Y5H2 935 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 SNX13Q9Y5W8 968 aa11.58□□□□□ -0.56
SHMT2-230ENST00000557427 MXRA5Q9NR99 2828 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 LRIT2A6NDA9 550 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 A8MUA0 341 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 C4orf51C9J302 202 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 ERI3O43414 337 aaKnown RBP11.57□□□□□ -0.56
SHMT2-230ENST00000557427 MAN1A2O60476 641 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 PGRP06401 933 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 SDC1P18827 310 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 IL10P22301 178 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 PTGER1P34995 402 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 NEK2P51955 445 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 PLA2G16P53816 162 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 OR4D2P58180 307 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 C21orf58P58505 322 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 STXBP1P61764 594 aaKnown RBP11.57□□□□□ -0.56
SHMT2-230ENST00000557427 RHAGQ02094 409 aa11.57□□□□□ -0.56
SHMT2-230ENST00000557427 SNTB1Q13884 538 aaKnown RBP11.57□□□□□ -0.56
SHMT2-230ENST00000557427 RUNX2Q13950 521 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms