RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 DNAAF2Q9NVR5 837 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-206ENST00000553888 GIN1Q9NXP7 522 aa11.9□□□□□ -0.5
VIPAS39-206ENST00000553888 A4GNTQ9UNA3 340 aa11.9□□□□□ -0.5
VIPAS39-206ENST00000553888 PTGES3LE9PB15 166 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 PCDHGA12O60330 932 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 ATP1B1P05026 303 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 HTR1AP08908 422 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 RFX3P48380 749 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 CSTF1Q05048 431 aaKnown RBP11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 CDK5R2Q13319 367 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 FAM214AQ32MH5 1076 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 RFX4Q33E94 735 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF311Q5JNZ3 666 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 PRPF38BQ5VTL8 546 aaKnown RBP11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 CDC73Q6P1J9 531 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 FRRS1Q6ZNA5 592 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 MAML2Q8IZL2 1156 aaPredicted RBP11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 TAGAPQ8N103 731 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 AMER2Q8N7J2 671 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 PIGKQ92643 395 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 RBM38Q9H0Z9 239 aaKnown RBP11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 DHCR7Q9UBM7 475 aaKnown RBP11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 KCND3Q9UK17 655 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 ATXN7L1Q9ULK2 861 aaPredicted RBP11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 PLCL2Q9UPR0 1127 aa11.9□□□□□ -0.51
VIPAS39-206ENST00000553888 GXYLT2A0PJZ3 443 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 PATE3B3GLJ2 98 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 TMEM150CB9EJG8 249 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 SRPX2O60687 465 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 CCNB2O95067 398 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 ELAVL4P26378 380 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 SSTR4P31391 388 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 OR1D4P47884 311 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 AVPR1BP47901 424 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 ALDH3B2P48448 385 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 GPR68Q15743 365 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 FIGNL1Q6PIW4 674 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 FAM192AQ9GZU8 254 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 PAPOLBQ9NRJ5 636 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 NTMQ9P121 344 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 NDRG4Q9ULP0 352 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 C19orf53Q9UNZ5 99 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 DTX4Q9Y2E6 619 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 A0A087WXM4 84 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 A0A0G2JPF8 293 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 HNRNPCL2B2RXH8 293 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 HNRNPCL3B7ZW38 293 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 OR10H2O60403 315 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 LGI1O95970 557 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 HNRNPCL4P0DMR1 293 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 TDGF1P13385 188 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 FOXL2P58012 376 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 PMS2P3Q13401 168 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 PMS2CLQ68D20 193 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 TTLL10Q6ZVT0 673 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 KCTD8Q6ZWB6 473 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 B3GNT8Q7Z7M8 397 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 ZAR1Q86SH2 424 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 OR52R1Q8NGF1 315 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 TANKQ92844 425 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 ZDHHC12Q96GR4 267 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 NPLQ9BXD5 320 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 PCDHGA6Q9Y5G7 932 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 CLDN16Q9Y5I7 305 aa11.89□□□□□ -0.51
VIPAS39-206ENST00000553888 DSPPQ9NZW4 1301 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 SLC1A7O00341 560 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 HRO43593 1189 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 UGT2B11O75310 529 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 SOX14O95416 240 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 CBX7O95931 251 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 ALPPP05187 535 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 FOLR1P15328 257 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 ALAS2P22557 587 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 CD1CP29017 333 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 SH3BGRP55822 239 aaPredicted RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 NNATQ16517 81 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 MAPK14Q16539 360 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 COLEC12Q5KU26 742 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 ATAD3BQ5T9A4 648 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 TYW3Q6IPR3 259 aaKnown RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF770Q6IQ21 691 aaPredicted RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 HEPHL1Q6MZM0 1159 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 SLC7A13Q8TCU3 470 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 CCDC74AQ96AQ1 378 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 TRNT1Q96Q11 434 aaKnown RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 PTGFRNQ9P2B2 879 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 NDOR1Q9UHB4 597 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 PEX12O00623 359 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 NUDT21O43809 227 aaKnown RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 BMP10O95393 424 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 RNH1P13489 461 aaKnown RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 CBLP22681 906 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 RXRGP48443 463 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 HLCSP50747 726 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 ANXA11P50995 505 aaKnown RBP11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 HMGA2P52926 109 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 KLHL17Q6TDP4 642 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 TMEM151BQ8IW70 566 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 OR4N2Q8NGD1 307 aa11.88□□□□□ -0.51
VIPAS39-206ENST00000553888 OR52P1PQ8NH57 321 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms