RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 VIPP01282 170 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 HOXD4P09016 255 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 C1QTNF9P0C862 333 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 RPS19P39019 145 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CRISP3P54108 245 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 RRAS2P62070 204 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 B4GALNT1Q00973 533 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 RIN1Q13671 783 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MED22Q15528 200 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 GLYR1Q49A26 553 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 RUNDC3AQ59EK9 446 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 FBXO48Q5FWF7 155 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 GPRC6AQ5T6X5 926 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ATG9BQ674R7 924 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 C19orf48Q6RUI8 117 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 GPRIN3Q6ZVF9 776 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 C11orf96Q7Z7L8 435 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PHC2Q8IXK0 858 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 LINC00518Q8N0U6 118 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 RASGEF1AQ8N9B8 481 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 C9orf43Q8TAL5 461 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ZDHHC1Q8WTX9 485 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 NUDT8Q8WV74 236 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 KLHL6Q8WZ60 621 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ULK4Q96C45 1275 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 GPR137Q96N19 417 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CNTNAP3BQ96NU0 1288 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MGLLQ99685 303 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CCDC3Q9BQI4 270 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CNPPD1Q9BV87 410 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 TMEM121BQ9BXQ6 578 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CNTNAP3Q9BZ76 1288 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PPIL3Q9H2H8 161 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 SCPEP1Q9HB40 452 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 EXOSC4Q9NPD3 245 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 WASH6PQ9NQA3 447 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MCUBQ9NWR8 336 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ZDHHC3Q9NYG2 299 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PCDHB1Q9Y5F3 818 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 TNPO3Q9Y5L0 923 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 RNF215Q9Y6U7 377 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ANKRD12Q6UB98 2062 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ITPR1Q14643 2758 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 SMG1Q96Q15 3661 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 COL27A1Q8IZC6 1860 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 IQCMA0A1B0GVH7 501 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 FABP12A6NFH5 140 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 OR2AG2A6NM03 316 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PPM1DO15297 605 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PLA2G10O15496 165 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 GPX5O75715 221 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 FABP3P05413 133 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 TSPAN19P0C672 248 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 JUPP14923 745 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 NSG1P42857 185 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MAP2K3P46734 347 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 DUSP3P51452 185 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 NUDT6P53370 316 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ST3GAL4Q11206 333 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CSTF3Q12996 717 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ILKQ13418 452 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 KIAA0040Q15053 153 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 NR6A1Q15406 480 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 HKDC1Q2TB90 917 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 KLHL12Q53G59 568 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MZT2BQ6NZ67 158 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 FAHD1Q6P587 224 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 Q6ZSR9 355 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF605Q86T29 641 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ATCAYQ86WG3 371 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 C17orf82Q86X59 251 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MSRB3Q8IXL7 192 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ARL14Q8N4G2 192 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 EEF1AKMT1Q8WVE0 214 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 KCNJ9Q92806 393 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 KIAA1191Q96A73 305 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CCDC74AQ96AQ1 378 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 GABARAPL3Q9BY60 117 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 BARHL1Q9BZE3 327 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ABCG4Q9H172 646 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 REEP1Q9H902 201 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 POPDC3Q9HBV1 291 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 IL1RAPQ9NPH3 570 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 SNTG1Q9NSN8 517 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MRPL39Q9NYK5 338 aaKnown RBP7.22□□□□□ -1.25
LIMA1-216ENST00000552909 SLC25A37Q9NYZ2 338 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 LRIT1Q9P2V4 623 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF225Q9UK10 706 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PCTPQ9UKL6 214 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 MSRB2Q9Y3D2 182 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 COMMD10Q9Y6G5 202 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 URB1O60287 2271 aaKnown RBP7.21□□□□□ -1.25
LIMA1-216ENST00000552909 PKD1L2Q7Z442 2459 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 A0A1W2PQM1 296 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 E9PQ18 207 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 AGRPO00253 132 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 SGTAO43765 313 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 VEGFDO43915 354 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 PPM1BO75688 479 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 OR4F21O95013 312 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms