RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HOXC11O43248 304 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PIP5K1CO60331 668 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLC2A10O95528 541 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 IL1AP01583 271 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLC35G4P0C7Q5 338 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 NR2F6P10588 404 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ACP2P11117 423 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 MYL12AP19105 171 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 CXCR2P25025 360 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 CERS1P27544 350 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PPP2R1BP30154 601 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 CTNNB1P35222 781 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 AVPR1BP47901 424 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 RNF144AP50876 292 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 CLDN2P57739 230 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TAS2R38P59533 333 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TAS2R41P59536 307 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 MRPS15P82914 257 aaKnown RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 BNC1Q01954 994 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 LTB4RQ15722 352 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FAM214AQ32MH5 1076 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF791Q3KP31 576 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM52BQ4KMG9 183 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PYDC2Q56P42 97 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 Q5BKY6 102 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ENTPD8Q5MY95 495 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PIP5KL1Q5T9C9 394 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PAMR1Q6UXH9 720 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 NKAIN4Q8IVV8 208 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SHISA5Q8N114 240 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ANKK1Q8NFD2 765 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 BBS1Q8NFJ9 593 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 OR4Q3Q8NH05 313 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SETD6Q8TBK2 473 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM163Q8TC26 289 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 DOK4Q8TEW6 326 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 RASSF5Q8WWW0 418 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ARSGQ96EG1 525 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLX1AQ9BQ83 275 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TMED9Q9BVK6 235 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 HDHD5Q9BXW7 423 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 MCOLN1Q9GZU1 580 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM245Q9H330 911 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TBC1D17Q9HA65 648 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SERGEFQ9UGK8 458 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 NDRG2Q9UN36 371 aaKnown RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLC9A8Q9Y2E8 581 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLC27A6Q9Y2P4 619 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TP53BP1Q12888 1972 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ARHGEF17Q96PE2 2063 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 RGS13O14921 159 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 POLR1CO15160 346 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PRODHO43272 600 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FCMRO60667 390 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 HPGDSO60760 199 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 UBXN7O94888 489 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PCDH8O95206 1070 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ZIC2O95409 532 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TIMP1P01033 207 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FGBP02675 491 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 GNSP15586 552 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 DDX5P17844 614 aaKnown RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 MC3RP41968 323 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 GPR4P46093 362 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 MTNR1AP48039 350 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SOX9P48436 509 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLC9A3P48764 834 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 KHKP50053 298 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SMSP52788 366 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SMIM11AP58511 58 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 CD83Q01151 205 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SCN1BQ07699 218 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 COX10Q12887 443 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 CAMK1Q14012 370 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PLK5Q496M5 336 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PDZK1Q5T2W1 519 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 RNLSQ5VYX0 342 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 KIAA1161Q6NSJ0 714 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 SLC27A4Q6P1M0 643 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FBXL6Q8N531 539 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 DTX3Q8N9I9 347 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FAM181AQ8N9Y4 354 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 OR9A2Q8NGT5 310 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 TEX47Q8TBZ9 253 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 WFIKKN2Q8TEU8 576 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 UBASH3BQ8TF42 649 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 KAT2AQ92830 837 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ARMC5Q96C12 935 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF707Q96C28 371 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 KCTD7Q96MP8 289 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 NECTIN4Q96NY8 510 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 QRFPRQ96P65 431 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 FCRL4Q96PJ5 515 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 OR7D2Q96RA2 312 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 PAQR5Q9NXK6 330 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-213ENST00000552720 DEC1Q9P2X7 70 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 GRIP1Q9Y3R0 1128 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 INSL6Q9Y581 213 aa7.04□□□□□ -1.28
LIMA1-213ENST00000552720 C2orf92A0A1B0GVN3 265 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZC3H12DA2A288 527 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms