RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 FKBP7Q9Y680 259 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 OR5K4A6NMS3 321 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 SEMA3DO95025 777 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 EXOSC7Q15024 291 aaKnown RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 ZNF517Q6ZMY9 492 aaPredicted RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 RNF111Q6ZNA4 994 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 RIT1Q92963 219 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 SERTAD3Q9UJW9 196 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 TMEM5Q9Y2B1 443 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 EXOSC1Q9Y3B2 195 aaKnown RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 OR2B3O76000 313 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 OXSR1O95747 527 aaPredicted RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 MT-ND5P03915 603 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 NARS2Q96I59 477 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 METTL2AQ96IZ6 378 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 SRA1Q9HD15 236 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 MBNL1Q9NR56 388 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 C17orf113A0A1B0GUU1 675 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 PLD2O14939 933 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 CD2P06729 351 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 BCAP31P51572 246 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 SPCS2Q15005 226 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 RPE65Q16518 533 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 VRK2Q86Y07 508 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 TRUB1Q8WWH5 349 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 CDS1Q92903 461 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 EID2BQ96D98 161 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 SLC41A3Q96GZ6 507 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 DSN1Q9H410 356 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 RMI1Q9H9A7 625 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 USP36Q9P275 1121 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 JRKO75564 520 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 SLITRK5O94991 958 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 SMIM18P0DKX4 95 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 ARAFP10398 606 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 ATP5A1P25705 553 aaKnown RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 OR4K13Q8NH42 304 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 CHIAQ9BZP6 476 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 CMAHPQ9Y471 501 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 NCOR1O75376 2440 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 GREB1LQ9C091 1923 aaPredicted RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 C18orf63Q68DL7 685 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 ATCAYQ86WG3 371 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 CPOQ8IVL8 374 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 SAMD12Q8N8I0 201 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 CREB3L4Q8TEY5 395 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 ZDHHC1Q8WTX9 485 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 LYSMD1Q96S90 227 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 MTHFD2LQ9H903 347 aaPredicted RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 SEC61A2Q9H9S3 476 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 PAK6Q9NQU5 681 aaPredicted RBP15.37■□□□□ 0.05
CUX1-213ENST00000549414 KLRF1Q9NZS2 232 aa15.37■□□□□ 0.05
CUX1-213ENST00000549414 TRBV4-1A0A0J9YWV2 114 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 SLC5A10A0PJK1 596 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 EIF1AYO14602 144 aaKnown RBP15.36■□□□□ 0.05
CUX1-213ENST00000549414 ALG10BQ5I7T1 473 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 LIN54Q6MZP7 749 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 PODNL1Q6PEZ8 512 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 C12orf40Q86WS4 652 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 PRR14Q9BWN1 585 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 POLDIP3Q9BY77 421 aaKnown RBP15.36■□□□□ 0.05
CUX1-213ENST00000549414 HCN2Q9UL51 889 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 SLC7A7Q9UM01 511 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 SVILO95425 2214 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 FAM183AA6NL82 134 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 FOXE1O00358 373 aaPredicted RBP15.36■□□□□ 0.05
CUX1-213ENST00000549414 SOX1O00570 391 aaPredicted RBP15.36■□□□□ 0.05
CUX1-213ENST00000549414 B4GALNT1Q00973 533 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 PSD4Q8NDX1 1056 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 TOE1Q96GM8 510 aaKnown RBP15.36■□□□□ 0.05
CUX1-213ENST00000549414 ASB16Q96NS5 453 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 SMURF1Q9HCE7 757 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 TAS2R16Q9NYV7 291 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 ENPP5Q9UJA9 477 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 NINQ8N4C6 2090 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 GFYI3L273 518 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 AIFM1O95831 613 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 CHRNEQ04844 493 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 IHHQ14623 411 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 ACBD7Q8N6N7 88 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 C1QTNF3Q9BXJ4 246 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 CARD8Q9Y2G2 431 aa15.36■□□□□ 0.05
CUX1-213ENST00000549414 KLK8O60259 260 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 RAB15P59190 212 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 NIPAL1Q6NVV3 410 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 VN1R2Q8NFZ6 395 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 OR6N2Q8NGY6 317 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 COQ8BQ96D53 544 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 NELL2Q99435 816 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 OR6C2Q9NZP2 312 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 PCDHGB1Q9Y5G3 927 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 CTSLP07711 333 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 ITIH1P19827 911 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 ERV3-1Q14264 604 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 ANKK1Q8NFD2 765 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 ADAMTS16Q8TE57 1224 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 TNFAIP8L1Q8WVP5 186 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 MS4A4EQ96PG1 132 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 ETHE1O95571 254 aa15.35■□□□□ 0.05
CUX1-213ENST00000549414 SERPINA3P01011 423 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms