RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TAF1AQ15573 450 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 AARDQ4LEZ3 155 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 EEF1DP3Q658K8 133 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 TXNRD3NBQ6F5E7 133 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ZNF704Q6ZNC4 412 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 CLDN22Q8N7P3 220 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 CRAMP1Q96RY5 1269 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 MRI1Q9BV20 369 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 TSPAN10Q9H1Z9 355 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 CHRDQ9H2X0 955 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 MFSD1Q9H3U5 465 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 RXFP3Q9NSD7 469 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ROBO2Q9HCK4 1378 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 KIF1BO60333 1816 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 MROH6A6NGR9 719 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 AQP7O14520 342 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ARHGAP33O14559 1287 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 RGS13O14921 159 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 OSMP13725 252 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 GDI1P31150 447 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 EPHA4P54764 986 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SNRPD1P62314 119 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 SLAMF1Q13291 335 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 EBPQ15125 230 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 SMN1Q16637 294 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 GTDC1Q4AE62 458 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 FRG2Q64ET8 278 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 KIAA0907Q7Z7F0 614 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 CDH26Q8IXH8 852 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 IQCF1Q8N6M8 205 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 COX18Q8N8Q8 333 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 FNDC9Q8TBE3 224 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 RSC1A1Q92681 617 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 RERGQ96A58 199 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 CMTM7Q96FZ5 175 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 FRG2BQ96QU4 278 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 MRM3Q9HC36 420 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 SARDHQ9UL12 918 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SPATA31A6Q5VVP1 1343 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 KAT6AQ92794 2004 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 TREHO43280 583 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 FZD7O75084 574 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 HSD11B1P28845 292 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 H3F3AP84243 136 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 MAT1AQ00266 395 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 ZNF792Q3KQV3 632 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ADGRF1Q5T601 910 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SYT6Q5T7P8 510 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 PLBD1Q6P4A8 553 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ZNF600Q6ZNG1 722 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 PPP1R3BQ86XI6 285 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 C1orf52Q8N6N3 182 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 FAM213BQ8TBF2 198 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 PRRT1Q99946 306 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 C20orf85Q9H1P6 137 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SLCO5A1Q9H2Y9 848 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 TMEM231Q9H6L2 316 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 DHDHQ9UQ10 334 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ZFYVE16Q7Z3T8 1539 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 PRR36Q9H6K5 1346 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 DUXAA6NLW8 204 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SAP18O00422 153 aaKnown RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 NCR1O76036 304 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 GIPP09681 153 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 MICAQ29983 383 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 ZMAT1Q5H9K5 638 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 CCNJQ5T5M9 372 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SLC9B2Q86UD5 537 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 TMEM86AQ8N2M4 240 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 NETO1Q8TDF5 533 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 GAS2L1Q99501 681 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 PDCD2LQ9BRP1 358 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 PARD6AQ9NPB6 346 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 SERTAD4Q9NUC0 356 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 UBE2J1Q9Y385 318 aaPredicted RBP8.34□□□□□ -1.07
YBX3-208ENST00000540447 PTGDR2Q9Y5Y4 395 aa8.34□□□□□ -1.07
YBX3-208ENST00000540447 OR51F1A6NGY5 319 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 LEUTXA8MZ59 168 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 B4DXG7 233 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 ENTPD3O75355 529 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 SPNP16150 400 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 IMPA1P29218 277 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 CCR7P32248 378 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 CSF2RBP32927 897 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 RPL29P47914 159 aaKnown RBP8.33□□□□□ -1.08
YBX3-208ENST00000540447 GAS6Q14393 721 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 TRIM61Q5EBN2 209 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 IL20RBQ6UXL0 311 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 SERPINA9Q86WD7 417 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 CHST13Q8NET6 341 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 NLGN2Q8NFZ4 835 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 SPACA1Q9HBV2 294 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 FZD3Q9NPG1 666 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 TM7SF3Q9NS93 570 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 RNF215Q9Y6U7 377 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 LOC730098B7Z3J9 87 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 PPP5D1E7EU14 171 aa8.33□□□□□ -1.08
YBX3-208ENST00000540447 NAA10P41227 235 aaPredicted RBP8.33□□□□□ -1.08
YBX3-208ENST00000540447 CCR6P51684 374 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms