RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TGFBR3LH3BV60 316 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SERPINB7O75635 380 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 AGR2O95994 175 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 CHRM4P08173 479 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 HNRNPCL4P0DMR1 293 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 ZNF28P17035 718 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 ITGA2P17301 1181 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 NT5EP21589 574 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 KCNJ5P48544 419 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 MAT1AQ00266 395 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 MERTKQ12866 999 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 EIF3IQ13347 325 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 DUSP7Q16829 419 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SLC36A3Q495N2 470 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 C3orf38Q5JPI3 329 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 MED25Q71SY5 747 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 TMPRSS12Q86WS5 348 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 HS3ST5Q8IZT8 346 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SMYD1Q8NB12 490 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 GPR32P1Q8NGA4 272 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 WDR36Q8NI36 951 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 COL21A1Q96P44 957 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 EPYCQ99645 322 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 RSPO3Q9BXY4 272 aaPredicted RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 RBCK1Q9BYM8 510 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 REEP1Q9H902 201 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 PRTFDC1Q9NRG1 225 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 GIN1Q9NXP7 522 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SAMHD1Q9Y3Z3 626 aaKnown RBP13.24□□□□□ -0.29
CUX1-209ENST00000487284 CLDN16Q9Y5I7 305 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 B3GALT1Q9Y5Z6 326 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 KCNE3Q9Y6H6 103 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 U3KQV3 271 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 SPTBN4Q9H254 2564 aa13.24□□□□□ -0.29
CUX1-209ENST00000487284 DSPPQ9NZW4 1301 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SPTBN2O15020 2390 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 CLDN4O14493 209 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 ADAMDEC1O15204 470 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 DNAJB5O75953 348 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SNAP29O95721 258 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 FESP07332 822 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 THRBP10828 461 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 CAPGP40121 348 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 XCR1P46094 333 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 OR1E2P47887 323 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 CHN2P52757 468 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 RAB15P59190 212 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 ADARB1P78563 741 aaKnown RBP13.23□□□□□ -0.29
CUX1-209ENST00000487284 KCNC4Q03721 635 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 MAP4K2Q12851 820 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 PPP1R8Q12972 351 aaKnown RBP13.23□□□□□ -0.29
CUX1-209ENST00000487284 TRMT12Q53H54 448 aaKnown RBP13.23□□□□□ -0.29
CUX1-209ENST00000487284 ATAD3BQ5T9A4 648 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 ST13P4Q8IZP2 240 aaPredicted RBP13.23□□□□□ -0.29
CUX1-209ENST00000487284 CACTIN-AS1Q8N1I8 211 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 DHRSXQ8N5I4 330 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SLC16A11Q8NCK7 471 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SIMC1Q8NDZ2 872 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 OR51Q1Q8NH59 317 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 ADAMTS15Q8TE58 950 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 CLIP3Q96DZ5 547 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 TRNT1Q96Q11 434 aaKnown RBP13.23□□□□□ -0.29
CUX1-209ENST00000487284 SPATA5L1Q9BVQ7 753 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SLC38A1Q9H2H9 487 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SMURF2Q9HAU4 748 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 EXD2Q9NVH0 621 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 CALML5Q9NZT1 146 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SEC14L3Q9UDX4 400 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 CDC14AQ9UNH5 594 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 SATB2Q9UPW6 733 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 PCDHGB3Q9Y5G1 929 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 ENPP4Q9Y6X5 453 aa13.23□□□□□ -0.29
CUX1-209ENST00000487284 MYOCOSA0A1B0GUC4 107 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 H0YAE9 185 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 CPNE3O75131 537 aaKnown RBP13.22□□□□□ -0.29
CUX1-209ENST00000487284 H6PDO95479 791 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 IFNW1P05000 195 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 HBQ1P09105 142 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 CT62P0C5K7 136 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 ACP2P11117 423 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 MYF6P23409 242 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 ARHGDIAP52565 204 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 HSD17B7P56937 341 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 SLC13A2Q13183 592 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 GK3PQ14409 553 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 PUM1Q14671 1186 aaKnown RBP eCLIP13.22□□□□□ -0.29
CUX1-209ENST00000487284 GPAT3Q53EU6 434 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 DCAF12Q5T6F0 453 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 ZCCHC12Q6PEW1 402 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 PROX1Q92786 737 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 HOXB13Q92826 284 aaPredicted RBP13.22□□□□□ -0.29
CUX1-209ENST00000487284 SLC35A4Q96G79 324 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 TAAR9Q96RI9 348 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 AMBRA1Q9C0C7 1298 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 PIGUQ9H490 435 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 CXorf21Q9HAI6 301 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 ZNF304Q9HCX3 659 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 TMEFF2Q9UIK5 374 aaPredicted RBP13.22□□□□□ -0.29
CUX1-209ENST00000487284 SH3GLB1Q9Y371 365 aa13.22□□□□□ -0.29
CUX1-209ENST00000487284 PCDHGB5Q9Y5G0 923 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms