RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SH3RF2Q8TEC5 729 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 PKP4Q99569 1192 aa12.66□□□□□ -0.38
USP40-208ENST00000450966 NME4O00746 187 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 SOX14O95416 240 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 MATN4O95460 622 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 PCCBP05166 539 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 CD48P09326 243 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 DCTP40126 519 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 TM4SF4P48230 202 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 DGKEP52429 567 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 GINS1Q14691 196 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 MOB1BQ7L9L4 216 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 IQCHQ86VS3 1027 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 CACNA1FO60840 1977 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 SMLR1H3BR10 107 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 ACOT7O00154 380 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 HRGP04196 525 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 OR4Q2P0C623 313 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 NR2C1P13056 603 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 ARL3P36405 182 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 DAOAP59103 153 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 TAP2Q03519 686 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 CDHR3Q6ZTQ4 885 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 FAM217AQ8IXS0 508 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 DCBLD1Q8N8Z6 715 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 MINDY3Q9H8M7 445 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 PLEKHA1Q9HB21 404 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 GOLGA2P5Q9HBQ8 144 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 GNG13Q9P2W3 67 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 RHCEP18577 417 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 WNT4P56705 351 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 OR4D2P58180 307 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 CDK6Q00534 326 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 ZNF155Q12901 538 aaPredicted RBP12.65□□□□□ -0.38
USP40-208ENST00000450966 TEX261Q6UWH6 196 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 SLC39A5Q6ZMH5 540 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 FBXW5Q969U6 566 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 PYCR2Q96C36 320 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 HSFX1Q9UBD0 423 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 PGAP2Q9UHJ9 254 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 SLC6A5Q9Y345 797 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 U3KQ87 197 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 LRIT2A6NDA9 550 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 MROH6A6NGR9 719 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 HSD3B1P14060 373 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 NT5EP21589 574 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 UPP1Q16831 310 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 CLDN22Q8N7P3 220 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 DNAAF1Q8NEP3 725 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 OR51D1Q8NGF3 324 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 FBXL18Q96ME1 805 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 ACTRT3Q9BYD9 372 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 SLC25A51Q9H1U9 297 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 KCNH6Q9H252 994 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 AKIP1Q9NQ31 210 aa12.65□□□□□ -0.38
USP40-208ENST00000450966 FAM170BA6NMN3 283 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 SIGLEC6O43699 453 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 ADH1BP00325 375 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 ITPRIPL2Q3MIP1 535 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 CARD16Q5EG05 197 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 NHSL2Q5HYW2 709 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 ARHGAP40Q5TG30 622 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 GLT8D1Q68CQ7 371 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 ABLIM2Q6H8Q1 611 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 ZC3H14Q6PJT7 736 aaKnown RBP12.65□□□□□ -0.39
USP40-208ENST00000450966 B3GNT8Q7Z7M8 397 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 GNPDA2Q8TDQ7 276 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 MOAP1Q96BY2 351 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 FOXRED1Q96CU9 486 aaPredicted RBP12.65□□□□□ -0.39
USP40-208ENST00000450966 HBEGFQ99075 208 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 SLC30A3Q99726 388 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 VAPAQ9P0L0 249 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 POMT1Q9Y6A1 747 aa12.65□□□□□ -0.39
USP40-208ENST00000450966 PIGBOS1A0A0B4J2F0 54 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 PIP5K1CO60331 668 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 CPNE6O95741 557 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SLC35G6P0C7Q6 338 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 HOXC12P31275 282 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 RAB1AP62820 205 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 CDK3Q00526 305 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 ALG10Q5BKT4 473 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 TMUB2Q71RG4 321 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 ELP5Q8TE02 316 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 FRS2Q8WU20 508 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 RPL3LQ92901 407 aaKnown RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 DOHHQ9BU89 302 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 V9GYS6 101 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 KCNJ13O60928 360 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 HTR1AP08908 422 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 ETV4P43268 484 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 TAS2R50P59544 299 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 RASGEF1BQ0VAM2 473 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SYT6Q5T7P8 510 aaPredicted RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 CYS1Q717R9 158 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 SLC30A7Q8NEW0 376 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 CMASQ8NFW8 434 aaPredicted RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 HAS2Q92819 552 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 ZFP37Q9Y6Q3 630 aaPredicted RBP12.64□□□□□ -0.39
USP40-208ENST00000450966 POM121BA6NF01 834 aa12.64□□□□□ -0.39
USP40-208ENST00000450966 KHNYNO15037 678 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms