RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 TMEM163Q8TC26 289 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 COQ8BQ96D53 544 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 PITX2Q99697 317 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 RC3H2Q9HBD1 1191 aaKnown RBP13.93□□□□□ -0.18
TCOF1-201ENST00000323668 NPAP1Q9NZP6 1156 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ASB4Q9Y574 426 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 H3BNC9 293 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 UPK1AO00322 258 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ECDO95905 644 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-201ENST00000323668 NPPBP16860 134 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 SLC19A1P41440 591 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 MAGEA2P43356 314 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 TIAL1Q01085 375 aaKnown RBP eCLIP13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ZNF613Q6PF04 617 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 UBE2Q1Q7Z7E8 422 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ASPGQ86U10 573 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 CLDN22Q8N7P3 220 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ACTRT3Q9BYD9 372 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 UPB1Q9UBR1 384 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ZNF69Q9UC07 566 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 SNX11Q9Y5W9 270 aa13.93□□□□□ -0.18
TCOF1-201ENST00000323668 ZNFX1Q9P2E3 1918 aaKnown RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 IFNA6P05013 189 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CSF2RAP15509 400 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 POU6F2P78424 691 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 SF3B4Q15427 424 aaKnown RBP eCLIP13.92□□□□□ -0.189e-7■■■■□ 20
TCOF1-201ENST00000323668 HSD17B12Q53GQ0 312 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ZNF776Q68DI1 518 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ARMCX6Q7L4S7 300 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ACTR6Q9GZN1 396 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 TXNL4BQ9NX01 149 aaKnown RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 MBD2Q9UBB5 411 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 STON1Q9Y6Q2 735 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 M0R233 179 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 RPS19P39019 145 aaKnown RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 XCR1P46094 333 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 MAZP56270 477 aaKnown RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 TSPAN5P62079 268 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 NTHL1P78549 312 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 BCL2L15Q5TBC7 163 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 SLX4IPQ5VYV7 408 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 RNF31Q96EP0 1072 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 SPACA7Q96KW9 195 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 GAL3ST1Q99999 423 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 GTPBP2Q9BX10 602 aaKnown RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 TMEM121BQ9BXQ6 578 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 POLDIP3Q9BY77 421 aaKnown RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 SIAEQ9HAT2 523 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CREBZFQ9NS37 354 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 TMEM184CQ9NVA4 438 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CLEC2DQ9UHP7 191 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 MAB21L2Q9Y586 359 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 TTC3P53804 2025 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 HPGDSO60760 199 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ATF4P18848 351 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 FAM71E1Q6IPT2 247 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 GDPD3Q7L5L3 318 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CCDC36Q8IYA8 594 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ACOT11Q8WXI4 607 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 RANGRFQ9HD47 186 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 FBXL21Q9UKT6 434 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 TRAPPC13A5PLN9 417 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 NDUFB5O43674 189 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CLEC3AO75596 197 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 H2AFB2P0C5Z0 115 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 PTGER1P34995 402 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CDC20Q12834 499 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 PLK5Q496M5 336 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ANKRD54Q6NXT1 300 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CEP76Q8TAP6 659 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 HCAR2Q8TDS4 363 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 SPRYD4Q8WW59 207 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-201ENST00000323668 NEURL3Q96EH8 262 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 S100A13Q99584 98 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 C19orf43Q9BQ61 176 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 CDCA4Q9BXL8 241 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 Q9N2J8 555 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 ZDHHC4Q9NPG8 344 aa13.92□□□□□ -0.18
TCOF1-201ENST00000323668 MICAL3Q7RTP6 2002 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 GMFGO60234 142 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 KLHL18O94889 574 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 SOX30O94993 753 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 RENP00797 406 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 RAB3BP20337 219 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 GABRA3P34903 492 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 MC3RP41968 323 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 MINDY4Q4G0A6 757 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 FLYWCH1Q4VC44 716 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 SNAP47Q5SQN1 464 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 SLC16A12Q6ZSM3 486 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 OR4N5Q8IXE1 308 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 YIPF7Q8N8F6 280 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 ALG8Q9BVK2 526 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 PPIL3Q9H2H8 161 aaKnown RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 COPZ2Q9P299 210 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 CLEC4EQ9ULY5 219 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 MYO7AQ13402 2215 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 ITGB7P26010 798 aa13.91□□□□□ -0.18
TCOF1-201ENST00000323668 ELAVL4P26378 380 aaKnown RBP13.91□□□□□ -0.18
TCOF1-201ENST00000323668 TEKQ02763 1124 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms