RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NMBRP28336 390 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 STC1P52823 247 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 MPP1Q00013 466 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 DMTNQ08495 405 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 VEZF1Q14119 521 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PON3Q15166 354 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 CLEC2AQ6UVW9 174 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PDZD3Q86UT5 571 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 C1orf52Q8N6N3 182 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SPOCK2Q92563 424 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PITX2Q99697 317 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 RAB1BQ9H0U4 201 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ERRFI1Q9UJM3 462 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PTBP2Q9UKA9 531 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 TMED5Q9Y3A6 229 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SAMHD1Q9Y3Z3 626 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 C5orf51A6NDU8 294 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 TUBAL3A6NHL2 446 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 FAM166BA8MTA8 275 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 C21orf140B9A014 251 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SGK494L7N484 410 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 CDX4O14627 284 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 TOR1AO14656 332 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 HCRTO43612 131 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 NUDT21O43809 227 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 HMGCLP35914 325 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SLC1A2P43004 574 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 GPR143P51810 404 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 AQP5P55064 265 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PAFAH1B3Q15102 231 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SLC5A12Q1EHB4 618 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF766Q5HY98 468 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 MANEALQ5VSG8 457 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 OR6Y1Q8NGX8 325 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 DNAJC9Q8WXX5 260 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF516Q92618 1163 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SNAPC3Q92966 411 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 NXNL1Q96CM4 212 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 P2RY12Q9H244 342 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 NLE1Q9NVX2 485 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 OXSMQ9NWU1 459 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 KCNIP1Q9NZI2 227 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 DHCR7Q9UBM7 475 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF346Q9UL40 294 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 OSGIN2Q9Y236 505 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PCDHGA1Q9Y5H4 931 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 AP4B1Q9Y6B7 739 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PSKH1P11801 424 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SQLEQ14534 574 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SSPNQ14714 243 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 VMACQ2NL98 169 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 AGBL2Q5U5Z8 902 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 UNQ6494/PRO21346Q6UXR6 183 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 C1orf87Q8N0U7 546 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 CISD2Q8N5K1 135 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF454Q8N9F8 522 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 OR11G2Q8NGC1 345 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 FBXO25Q8TCJ0 367 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 COL21A1Q96P44 957 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 SPOCK3Q9BQ16 436 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 NXF5Q9H1B4 397 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 C19orf12Q9NSK7 152 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 TBCCD1Q9NVR7 557 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 DMAC2Q9NW81 257 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 MMACHCQ9Y4U1 282 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ANKRD30BLA7E2S9 258 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 MAGEB17A8MXT2 336 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 NME6O75414 186 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 CLPTM1O96005 669 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 MT-CO2P00403 227 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 UBL4AP11441 157 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 RPS2P15880 293 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 FPR2P25090 351 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PRDX3P30048 256 aaKnown RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PSPHP78330 225 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 PM20D1Q6GTS8 502 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF574Q6ZN55 896 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 LRRC55Q6ZSA7 311 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 RTN4RL1Q86UN2 441 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-218ENST00000640036 FJX1Q86VR8 437 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 LRRC34Q8IZ02 419 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 NUP43Q8NFH3 380 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 RHNO1Q9BSD3 238 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 MUC13Q9H3R2 512 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 OBP2BQ9NPH6 170 aa4.76□□□□□ -1.65
SCN1A-218ENST00000640036 IGHV1OR15-9A0A0B4J2B8 117 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MDFIC2A0A1B0GVS7 189 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 A0A1W2PQ09 198 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 HTR3EA5X5Y0 456 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 C11orf98E9PRG8 122 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 TULP2O00295 520 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SLC34A2O95436 690 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 DPP4P27487 766 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 MAP3K8P41279 467 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 FASLGP48023 281 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 SCAPQ12770 1279 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PCBP2Q15366 365 aaKnown RBP eCLIP4.75□□□□□ -1.65
SCN1A-218ENST00000640036 AARDQ4LEZ3 155 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 PRAMEF20Q5VT98 475 aa4.75□□□□□ -1.65
SCN1A-218ENST00000640036 RAD9BQ6WBX8 426 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms