RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LRRC37BQ96QE4 947 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 LMF2Q9BU23 707 aaKnown RBP18.24■□□□□ 0.51
UPF3A-211ENST00000618700 NXF5Q9H1B4 397 aaKnown RBP18.24■□□□□ 0.51
UPF3A-211ENST00000618700 CDCP1Q9H5V8 836 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 LIN28AQ9H9Z2 209 aaKnown RBP18.24■□□□□ 0.51
UPF3A-211ENST00000618700 EQTNQ9NQ60 294 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 GPATCH2Q9NW75 528 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 TUBD1Q9UJT1 453 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 VPS4AQ9UN37 437 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 NBEAQ8NFP9 2946 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 BBIP1A8MTZ0 92 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ANGPT2O15123 496 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ERN1O75460 977 aaKnown RBP18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ITGA10O75578 1167 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ALPPP05187 535 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 HMGN2P05204 90 aaKnown RBP18.23■□□□□ 0.51
UPF3A-211ENST00000618700 GSNP06396 782 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 PPICP45877 212 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 DCAF7P61962 342 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 KCNAB2Q13303 367 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 TP53BP2Q13625 1128 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 GTDC1Q4AE62 458 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 PIGGQ5H8A4 983 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 COQ5Q5HYK3 327 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ABHD17BQ5VST6 288 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ZCCHC12Q6PEW1 402 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 BHLHB9Q6PI77 547 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 NPSR1Q6W5P4 371 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 CLEC4FQ8N1N0 589 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 CDRT4Q8N9R6 151 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 NEURL3Q96EH8 262 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 SLC35A5Q9BS91 424 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 ADNPQ9H2P0 1102 aa18.23■□□□□ 0.51
UPF3A-211ENST00000618700 GPR55Q9Y2T6 319 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-211ENST00000618700 YARS2Q9Y2Z4 477 aaKnown RBP18.23■□□□□ 0.51
UPF3A-211ENST00000618700 TRBV5-3A0A0A0MS03 114 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 FRG2CA6NGY1 282 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 TTC36A6NLP5 189 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 WWP2O00308 870 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 TO15178 435 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 ZNF354AO60765 605 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 OR2J2O76002 312 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 C1QCP02747 245 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 FAM87AP0C7U9 286 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 CT45A8P0DMV1 189 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 CT45A9P0DMV2 189 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 DRD5P21918 477 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 CORO7P57737 925 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 PSG6Q00889 435 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 CYLC2Q14093 348 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 LASP1Q14847 261 aaKnown RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 CT45A2Q5DJT8 189 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 HLA-DQA1Q5Y7H0 255 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 DLEU7Q6UYE1 221 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 ZNF621Q6ZSS3 439 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 C6orf120Q7Z4R8 191 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 MSRB3Q8IXL7 192 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 BEST3Q8N1M1 668 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 DNAJB8Q8NHS0 232 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 RP9Q8TA86 221 aaKnown RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 ZFP90Q8TF47 636 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 ABHD17AQ96GS6 310 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 LCORQ96JN0 433 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 LMF1Q96S06 567 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 RASL10BQ96S79 203 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 RNF32Q9H0A6 362 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 SERHL2Q9H4I8 314 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 ZBTB20Q9HC78 741 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 SLAMF8Q9P0V8 285 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 RALYQ9UKM9 306 aaKnown RBP18.22■□□□□ 0.51
UPF3A-211ENST00000618700 PCDHGB7Q9Y5F8 929 aa18.22■□□□□ 0.51
UPF3A-211ENST00000618700 LOC100653049A0A140TA62 436 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 ERVH48-1M5A8F1 160 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 CDK2AP1O14519 115 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 ACOX3O15254 700 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 KRT34O76011 436 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 PDGFAP04085 211 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 ACP2P11117 423 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 COX4I1P13073 169 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 PRDX6P30041 224 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 TRHRP34981 398 aaPredicted RBP18.21■□□□□ 0.51
UPF3A-211ENST00000618700 MAN2A2P49641 1150 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 PRIM2P49643 509 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 NR0B1P51843 470 aaKnown RBP18.21■□□□□ 0.51
UPF3A-211ENST00000618700 NNATQ16517 81 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 REP15Q6BDI9 236 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 LYPD8Q6UX82 237 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 LINC00696Q6ZRV3 163 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 SLC15A4Q8N697 577 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 POU5F2Q8N7G0 328 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 MIPOL1Q8TD10 442 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 C16orf58Q96GQ5 468 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 ARHGAP9Q9BRR9 750 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 SLC25A37Q9NYZ2 338 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 STMN3Q9NZ72 180 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 MAP10Q9P2G4 905 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 PCDHB14Q9Y5E9 798 aa18.21■□□□□ 0.51
UPF3A-211ENST00000618700 PIEZO2Q9H5I5 2752 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 K7EM74 188 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 NKX2-2O95096 273 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms