RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CYP3A5P20815 502 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 SAA4P35542 130 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 POU3F4P49335 361 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 HNRNPA3P51991 378 aaKnown RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 VCPP55072 806 aaKnown RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 TIMM10P62072 90 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 RPS4XP62701 263 aaKnown RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 HERV-K104P63124 156 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 ASIC1P78348 528 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 RCN2Q14257 317 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 CD226Q15762 336 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 IL17AQ16552 155 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 STX1AQ16623 288 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 KCTD19Q17RG1 926 aaPredicted RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 TCHHL1Q5QJ38 904 aaPredicted RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 METTL11BQ5VVY1 283 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 TMEM270Q6UE05 265 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 CLYBLQ8N0X4 340 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 FAM104AQ969W3 186 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 CFAP36Q96G28 342 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 RPGRIP1Q96KN7 1286 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 HCAR1Q9BXC0 346 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 COPS7BQ9H9Q2 264 aaPredicted RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 RNPEPL1Q9HAU8 725 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 DDX28Q9NUL7 540 aaKnown RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 CWC25Q9NXE8 425 aaPredicted RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 ERVK-18Q9QC07 812 aa1.82□□□□□ -2.12
VPS35-207ENST00000568191 TRMT6Q9UJA5 497 aaKnown RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 LEF1Q9UJU2 399 aaPredicted RBP1.82□□□□□ -2.12
VPS35-207ENST00000568191 TCP11X1B4DZS4 312 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 AKAP3O75969 853 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 PGK1P00558 417 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 HSP90AB1P08238 724 aaKnown RBP1.81□□□□□ -2.12
VPS35-207ENST00000568191 WNT2P09544 360 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 UROSP10746 265 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 PSG2P11465 335 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 VCLP18206 1134 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 UGT1A6P19224 532 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 IGFBP5P24593 272 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 HOXD10P28358 340 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 ACADSBP45954 432 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 ALDH3B2P48448 385 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 GEMP55040 296 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 ZNF33BQ06732 778 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 SLMAPQ14BN4 828 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 C16orf72Q14CZ0 275 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 ZKSCAN8Q15776 578 aaPredicted RBP1.81□□□□□ -2.12
VPS35-207ENST00000568191 ZIC1Q15915 447 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 PRR4Q16378 134 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 SGCBQ16585 318 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 KBTBD12Q3ZCT8 623 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 SLC39A12Q504Y0 691 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 CCDC184Q52MB2 194 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 DCST2Q5T1A1 773 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 LINC00696Q6ZRV3 163 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 TSEN54Q7Z6J9 526 aaKnown RBP1.81□□□□□ -2.12
VPS35-207ENST00000568191 OR4A16Q8NH70 328 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 GLYATL1Q969I3 302 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 SLC25A38Q96DW6 304 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 VPS39Q96JC1 886 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 CPXM1Q96SM3 734 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 NICN1Q9BSH3 213 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 CNPY3Q9BT09 278 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 DPH7Q9BTV6 452 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 FUNDC2Q9BWH2 189 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 MMADHCQ9H3L0 296 aaPredicted RBP1.81□□□□□ -2.12
VPS35-207ENST00000568191 PTGES2Q9H7Z7 377 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 DCLRE1BQ9H816 532 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 ABCB8Q9NUT2 735 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 KLHDC2Q9Y2U9 406 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 RAI1Q7Z5J4 1906 aaPredicted RBP1.81□□□□□ -2.12
VPS35-207ENST00000568191 SYNJ2O15056 1496 aa1.81□□□□□ -2.12
VPS35-207ENST00000568191 IGKV2-28A0A075B6P5 120 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 PANO1I0J062 215 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 OR7A17O14581 309 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 CHEK1O14757 476 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 SH2D1BO14796 132 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 BBOX1O75936 387 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 IGKV2D-28P01615 120 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 IGHV3-23P01764 117 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 HPNP05981 417 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 HSP90AA1P07900 732 aaKnown RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 SFTPBP07988 381 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 SERPINF2P08697 491 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 VDRP11473 427 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 CYP11B1P15538 503 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 FUT3P21217 361 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 MUTP22033 750 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 IGHV1-2P23083 117 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 NF2P35240 595 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 OR1D4P47884 311 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 HAND2P61296 217 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 PUDPQ08623 228 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 KLF5Q13887 457 aaPredicted RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 SMC1AQ14683 1233 aaKnown RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 STXBP2Q15833 593 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 HKDC1Q2TB90 917 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 ZNF528Q3MIS6 628 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 CCDC14Q49A88 953 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 SBK1Q52WX2 424 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms