RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FOXD3Q9UJU5 478 aaPredicted RBP14.66□□□□□ -0.06
CLN3-229ENST00000567963 MBD3L4A6NDZ8 208 aaPredicted RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 MBD3L3A6NE82 208 aaPredicted RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 FRG2CA6NGY1 282 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 MBD3L5A6NJ08 208 aaPredicted RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 TO15178 435 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 CBR3O75828 277 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 ACTL6AO96019 429 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 CHN1P15882 459 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 IMPDH1P20839 514 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 RAE1P78406 368 aaKnown RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 CSTF3Q12996 717 aaKnown RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 LCA5Q86VQ0 697 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 WDSUB1Q8N9V3 476 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 MBD3L2Q8NHZ7 208 aaPredicted RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 METTL6Q8TCB7 284 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 ZPLD1Q8TCW7 415 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 ZNF675Q8TD23 568 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 MTBPQ96DY7 904 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 TMEM237Q96Q45 408 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 KLRF1Q9NZS2 232 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 DLGAP4Q9Y2H0 992 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 GPR55Q9Y2T6 319 aaPredicted RBP14.65□□□□□ -0.06
CLN3-229ENST00000567963 VPS13CQ709C8 3753 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 C2CD3Q4AC94 2353 aa14.65□□□□□ -0.06
CLN3-229ENST00000567963 BCAS2O75934 225 aaPredicted RBP14.64□□□□□ -0.07
CLN3-229ENST00000567963 ESRRBO95718 433 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 ABHD2P08910 425 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 DRD2P14416 443 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 FLYWCH1Q4VC44 716 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 ZNF628Q5EBL2 1059 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 GPRIN3Q6ZVF9 776 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 GBP7Q8N8V2 638 aaPredicted RBP14.64□□□□□ -0.07
CLN3-229ENST00000567963 FAM222BQ8WU58 562 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 NINJ1Q92982 152 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 TMBIM1Q969X1 311 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 TMCO6Q96DC7 493 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 ERP27Q96DN0 273 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 ACPTQ9BZG2 426 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 CLEC4MQ9H2X3 399 aaPredicted RBP14.64□□□□□ -0.07
CLN3-229ENST00000567963 LIME1Q9H400 295 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 ANKRA2Q9H9E1 313 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 MAPRE3Q9UPY8 281 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 MED12Q93074 2177 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 MPDZO75970 2070 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 HRNRQ86YZ3 2850 aaPredicted RBP14.64□□□□□ -0.07
CLN3-229ENST00000567963 DOCK7Q96N67 2140 aa14.64□□□□□ -0.07
CLN3-229ENST00000567963 GNG14A0A1W2PPG7 69 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 OR6C70A6NIJ9 312 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 A6NNC1 897 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 PCDH7O60245 1069 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 IL3P08700 152 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CT45A8P0DMV1 189 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CT45A9P0DMV2 189 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CPN1P15169 458 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 ATP5F1P24539 256 aaPredicted RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 CTSSP25774 331 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 HMOX2P30519 316 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 AGFG1P52594 562 aaKnown RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 RCAN2Q14206 197 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 HEPACAMQ14CZ8 416 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CT45A2Q5DJT8 189 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 SAMD14Q8IZD0 417 aaPredicted RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 APIPQ96GX9 242 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 COL21A1Q96P44 957 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 BTBD9Q96Q07 612 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 FOXC2Q99958 501 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CXXC4Q9H2H0 198 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 SERHLQ9NQF3 203 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 PFDN4Q9NQP4 134 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CCM2LQ9NUG4 571 aaPredicted RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 NFU1Q9UMS0 254 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 ITPR3Q14573 2671 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 MAP1AP78559 2803 aaPredicted RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 ANKHD1Q8IWZ3 2542 aaKnown RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 PRAMEF25A6NGN4 478 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 RIPK2O43353 540 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 ABCB7O75027 752 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 REM1O75628 298 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 IL18BPO95998 194 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 OPRM1P35372 400 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 GCKP35557 465 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 SLCO1A2P46721 670 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 PRKAA2P54646 552 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 HMGCS1Q01581 520 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 ACSM2AQ08AH3 577 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CEBPEQ15744 281 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 SPIN4Q56A73 249 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 ACSM2BQ68CK6 577 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 TRMT10CQ7L0Y3 403 aaKnown RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 SLC22A9Q8IVM8 553 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 TRIM42Q8IWZ5 723 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 C9orf106Q8NAJ2 232 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 OR9A2Q8NGT5 310 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 OR14L1PQ8NHC6 308 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 C16orf78Q8WTQ4 265 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 KAT2AQ92830 837 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 EXOSC8Q96B26 276 aaKnown RBP14.63□□□□□ -0.07
CLN3-229ENST00000567963 L3HYPDHQ96EM0 354 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 C11orf24Q96F05 449 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms