RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 KLRF1Q9NZS2 232 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 SPASTQ9UBP0 616 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 IKZF3Q9UKT9 509 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ZNF346Q9UL40 294 aaKnown RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 EMCNQ9ULC0 261 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 ISY1Q9ULR0 285 aaKnown RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 FZR1Q9UM11 496 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 PIN4Q9Y237 131 aaKnown RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 NUDCQ9Y266 331 aa2.15□□□□□ -2.07
CD44-238ENST00000534296 MTF2Q9Y483 593 aaPredicted RBP2.15□□□□□ -2.07
CD44-238ENST00000534296 IGHV3-16A0A0C4DH30 117 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 TRBV5-4A0A0C4DH59 114 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 TMEM89A2RUT3 159 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 LRIT2A6NDA9 550 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 MFSD2BA6NFX1 497 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RPL37AP8A6NKH3 93 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 ANKRD30BLA7E2S9 258 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 EFCAB7A8K855 629 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 NPIPA2E9PIF3 369 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 H3BTX0 84 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 HAT1O14929 419 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 FRAT2O75474 233 aaPredicted RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 SCGB2A1O75556 95 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RHBDL1O75783 438 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CXCL14O95715 111 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RENP00797 406 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 TGFAP01135 160 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 IGHG1P01857 330 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CXCL10P02778 98 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 H2AFZP0C0S5 128 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 FOSL2P15408 326 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 KLK2P20151 261 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 ACP1P24666 158 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 UCP1P25874 307 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CCND2P30279 289 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CHRNA3P32297 505 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 SLC6A8P48029 635 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 EMDP50402 254 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 METAP1P53582 386 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 HMGCS2P54868 508 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 PRKCEQ02156 737 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 MSLNQ13421 630 aaPredicted RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 KARSQ15046 597 aaKnown RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 MICAQ29983 383 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 TAF3Q5VWG9 929 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 LIPKQ5VXJ0 399 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 SLX4IPQ5VYV7 408 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 LEMD1Q68G75 181 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 C1orf186Q6ZWK4 172 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CCDC71Q8IV32 467 aaPredicted RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 SLC22A18ASQ8N1D0 253 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CADM2Q8N3J6 435 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CD177Q8N6Q3 437 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 MRPL43Q8N983 215 aaKnown RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 OR56B1Q8NGI3 324 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 OR4F5Q8NH21 305 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RFESDQ8TAC1 157 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 SSC4DQ8WTU2 575 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 TFB1MQ8WVM0 346 aaKnown RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 TAF4BQ92750 862 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 OR5M11Q96RB7 305 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 FAM173AQ9BQD7 235 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 CCDC28BQ9BUN5 200 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 WRAP53Q9BUR4 548 aaKnown RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 GPR174Q9BXC1 333 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 TRIM9Q9C026 710 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 ROPN1Q9HAT0 212 aaPredicted RBP2.14□□□□□ -2.07
CD44-238ENST00000534296 VAT1LQ9HCJ6 419 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 NRN1Q9NPD7 142 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 NGBQ9NPG2 151 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RDH8Q9NYR8 311 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 GHRLQ9UBU3 117 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 B4GALT7Q9UBV7 327 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 MIOXQ9UGB7 285 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RSPH14Q9UHP6 348 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 ATP6V1HQ9UI12 483 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 SPATA2Q9UM82 520 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 MGAT4BQ9UQ53 548 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 RNF24Q9Y225 148 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 NAALAD2Q9Y3Q0 740 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 GRIN2DO15399 1336 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 FGD5Q6ZNL6 1462 aa2.14□□□□□ -2.07
CD44-238ENST00000534296 A0A0A6YYD4 124 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 A0A0U1RRA0 63 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 FAM230AA0A1W2PPH8 454 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 TTC26A0AVF1 554 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 SRRM4A7MD48 611 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 C19orf81C9J6K1 198 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 K7EQG2 157 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 LCMT2O60294 686 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 RANBP6O60518 1105 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 NOL3O60936 208 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 LRP3O75074 770 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 TOM1L1O75674 476 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 ECDO95905 644 aaPredicted RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 THY1P04216 161 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 ANXA4P09525 319 aaPredicted RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 KRTAP1-4P0C5Y4 121 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 H2AFXP16104 143 aaPredicted RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 SELEP16581 610 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms