RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	HS3ST6	Q96QI5	342 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	PAFAH2	Q99487	392 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLC39A3	Q9BRY0	314 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	G6PC3	Q9BUM1	346 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	OSBPL11	Q9BXB4	747 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	DERL2	Q9GZP9	239 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	LYAR	Q9NX58	379 aa	Known RBP	11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLC17A6	Q9P2U8	582 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	ADGRE2	Q9UHX3	823 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	TLN2	Q9Y4G6	2542 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	EXPH5	Q8NEV8	1989 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	RTTN	Q86VV8	2226 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	NCF1B	A6NI72	391 aa	Predicted RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	SMIM23	A6NLE4	172 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	NCF1C	A8MVU1	366 aa	Predicted RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	GNB5	O14775	395 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	PRAMEF4	O60810	478 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	STK16	O75716	305 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	CBR3	O75828	277 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	SLC35E2B	P0CK96	405 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	SLC35E2	P0CK97	266 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	NCF1	P14598	390 aa	Predicted RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	POU2F1	P14859	743 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	ABCD3	P28288	659 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	LOX	P28300	417 aa	Predicted RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	RAP1GDS1	P52306	607 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	NR1H2	P55055	460 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	IRF8	Q02556	426 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	FUT7	Q11130	342 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	CAPRIN1	Q14444	709 aa	Known RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	C18orf21	Q32NC0	220 aa	Predicted RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	KBTBD12	Q3ZCT8	623 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	C6orf163	Q5TEZ5	329 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	PRAMEF9	Q5VWM5	478 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	SULT1C3	Q6IMI6	304 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	MED27	Q6P2C8	311 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	TIFAB	Q6ZNK6	161 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	LRRC70	Q7Z2Q7	622 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	GALNT12	Q8IXK2	581 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	SNX31	Q8N9S9	440 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR14L1P	Q8NHC6	308 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	MZB1	Q8WU39	189 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	CDKL2	Q92772	493 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	MAPRE3	Q9UPY8	281 aa		11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	EXO1	Q9UQ84	846 aa	Known RBP	11.27	□□□□□ -0.61
CAPN1-223	ENST00000533079	ANK3	Q12955	4377 aa	Known RBP	11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	MPDZ	O75970	2070 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	ANK2	Q01484	3957 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	FAM95C	A0A1B0GW59	222 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	LRRC14B	A6NHZ5	514 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	C16orf97	H3BN30	126 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	PLOD2	O00469	737 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	TAPBP	O15533	448 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	PPM1B	O75688	479 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	TGFB1	P01137	390 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	INHBA	P08476	426 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	SNRPA	P09012	282 aa	Known RBP	11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	NR2F6	P10588	404 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	PPP3CB	P16298	524 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF708	P17019	499 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	LSP1	P33241	339 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	LHX2	P50458	406 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	ATP5J2	P56134	94 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	SRY	Q05066	204 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	MGAT5	Q09328	741 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	CHIT1	Q13231	466 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	TNK1	Q13470	666 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	BEX5	Q5H9J7	111 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	DEPDC1	Q5TB30	811 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	TMEM64	Q6YI46	380 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	SH2D5	Q6ZV89	423 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	P4HA3	Q7Z4N8	544 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	GBP7	Q8N8V2	638 aa	Predicted RBP	11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	PDPR	Q8NCN5	879 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR7G1	Q8NGA0	311 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	ADIPOR1	Q96A54	375 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	RGMA	Q96B86	450 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	STARD4	Q96DR4	205 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	CFAP36	Q96G28	342 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	WDR41	Q9HAD4	459 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	CXorf21	Q9HAI6	301 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	PRM3	Q9NNZ6	103 aa		11.26	□□□□□ -0.61
CAPN1-223	ENST00000533079	PLPP1	O14494	284 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ACOX3	O15254	700 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	CD5L	O43866	347 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ICOSLG	O75144	302 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ABCB1	P08183	1280 aa	Predicted RBP	11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	CD8B	P10966	210 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	PCNA	P12004	261 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	CHN1	P15882	459 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	SRD5A2	P31213	254 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	SSTR4	P31391	388 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	PIK3CB	P42338	1070 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	HSPA7	P48741	367 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	HNRNPH2	P55795	449 aa	Known RBP	11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	CLDN18	P56856	261 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	GNGT1	P63211	74 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	GUCY1A3	Q02108	690 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	SLC18A2	Q05940	514 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms