RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 NXF5Q9H1B4 397 aaKnown RBP14.86□□□□□ -0.03
VIM-208ENST00000497849 OR10A5Q9H207 317 aa14.86□□□□□ -0.03
VIM-208ENST00000497849 TAS2R10Q9NYW0 307 aa14.86□□□□□ -0.03
VIM-208ENST00000497849 PHF11Q9UIL8 331 aa14.86□□□□□ -0.03
VIM-208ENST00000497849 YLPM1P49750 1951 aaKnown RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 SLC22A20A6NK97 555 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 EMC8O43402 210 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 FAM153BP0C7A2 387 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 SLC35E2BP0CK96 405 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 SLC35E2P0CK97 266 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 CD8BP10966 210 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 TBXA2RP21731 343 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 GPX3P22352 226 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 TLX1P31314 330 aaPredicted RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 ACVR1BP36896 505 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 MAGEA4P43358 317 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 TBCCQ15814 346 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 PDK4Q16654 411 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 HIST2H2ACQ16777 129 aaPredicted RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 FAM153CQ494X1 144 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 DEPDC1Q5TB30 811 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 HIST2H2AA3Q6FI13 130 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 AAGABQ6PD74 315 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 TRMT10BQ6PF06 316 aaKnown RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 LAS2Q8IYD9 372 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 ZCCHC7Q8N3Z6 543 aaKnown RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 C17orf47Q8NEP4 570 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 FIG4Q92562 907 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 PARD6BQ9BYG5 372 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 KLHL4Q9C0H6 718 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 SLCO5A1Q9H2Y9 848 aa14.85□□□□□ -0.03
VIM-208ENST00000497849 PPANQ9NQ55 473 aaKnown RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 PTBP2Q9UKA9 531 aaKnown RBP14.85□□□□□ -0.03
VIM-208ENST00000497849 A0A1W2PR48 441 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 PLPP1O14494 284 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 DYNC1I1O14576 645 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 GPRIN2O60269 458 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 STK16O75716 305 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 PCNAP12004 261 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 NAGAP17050 411 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 KRT15P19012 456 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 SSTR1P30872 391 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 SRD5A2P31213 254 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 BUD31P41223 144 aaPredicted RBP14.84□□□□□ -0.03
VIM-208ENST00000497849 TAS2R39P59534 338 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 IRF8Q02556 426 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 SNTA1Q13424 505 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 NNATQ16517 81 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 MRM1Q6IN84 353 aaKnown RBP14.84□□□□□ -0.03
VIM-208ENST00000497849 NUP54Q7Z3B4 507 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 MILR1Q7Z6M3 343 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 GALNT12Q8IXK2 581 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 TCAIMQ8N3R3 496 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 PYROXD1Q8WU10 500 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 AKAP1Q92667 903 aaKnown RBP eCLIP14.84□□□□□ -0.03
VIM-208ENST00000497849 CMTM7Q96FZ5 175 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 PLPPR2Q96GM1 343 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 SFXN2Q96NB2 322 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 ZNF717Q9BY31 904 aaPredicted RBP14.84□□□□□ -0.03
VIM-208ENST00000497849 KLRF1Q9NZS2 232 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 FBXL2Q9UKC9 423 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 ASB4Q9Y574 426 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 PSAT1Q9Y617 370 aa14.84□□□□□ -0.03
VIM-208ENST00000497849 EIF3HO15372 352 aaKnown RBP eCLIP14.83□□□□□ -0.04
VIM-208ENST00000497849 TMPRSS11DO60235 418 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 UGT2B11O75310 529 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 PIAS1O75925 651 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 AIFM1O95831 613 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 THBS1P07996 1170 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 SOD3P08294 240 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 CNTFP26441 200 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 CLDN15P56746 228 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 GPX6P59796 221 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 SRSF2Q01130 221 aaKnown RBP14.83□□□□□ -0.04
VIM-208ENST00000497849 OCRLQ01968 901 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 C6orf52Q5T4I8 152 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 STEAP4Q687X5 459 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 WDR93Q6P2C0 686 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 OR7G3Q8NG95 312 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 LILRB1Q8NHL6 650 aaPredicted RBP14.83□□□□□ -0.04
VIM-208ENST00000497849 RGMAQ96B86 450 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 LRRC39Q96DD0 335 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 TRMT61AQ96FX7 289 aaKnown RBP14.83□□□□□ -0.04
VIM-208ENST00000497849 FMO2Q99518 471 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 CNOT10Q9H9A5 744 aaKnown RBP14.83□□□□□ -0.04
VIM-208ENST00000497849 CDC42EP3Q9UKI2 254 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 RAB21Q9UL25 225 aa14.83□□□□□ -0.04
VIM-208ENST00000497849 FAM95CA0A1B0GW59 222 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 B4DXG7 233 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 ADAM11O75078 769 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 EEDO75530 441 aaKnown RBP14.82□□□□□ -0.04
VIM-208ENST00000497849 IGHV4-39P01824 125 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 DANCRP0C864 163 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 NR2F6P10588 404 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 S1PR1P21453 382 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 TCEA1P23193 301 aaKnown RBP14.82□□□□□ -0.04
VIM-208ENST00000497849 CDKN1AP38936 164 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 B3GALT5-AS1P59052 145 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 VSNL1P62760 191 aa14.82□□□□□ -0.04
VIM-208ENST00000497849 GUSBP1Q15486 140 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms