RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CALHM2Q9HA72 323 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 PFDN4Q9NQP4 134 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 GALNT8Q9NY28 637 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 PSD3Q9NYI0 1048 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 AHSPQ9NZD4 102 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 NINJ2Q9NZG7 142 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 EDARQ9UNE0 448 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 RPH3AQ9Y2J0 694 aaPredicted RBP11.5□□□□□ -0.57
SKA1-205ENST00000494518 PRR14LQ5THK1 2151 aa11.5□□□□□ -0.57
SKA1-205ENST00000494518 ZANQ9Y493 2812 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 GOLGA6L10A6NI86 522 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 SMIM24O75264 130 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 ACTL6AO96019 429 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 PDYNP01213 254 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 CASQ1P31415 396 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 GCKP35557 465 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 CPOXP36551 454 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 CDH13P55290 713 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 DCAF7P61962 342 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 SORDQ00796 357 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 GALNT1Q10472 559 aaPredicted RBP11.49□□□□□ -0.57
SKA1-205ENST00000494518 TCHHL1Q5QJ38 904 aaPredicted RBP11.49□□□□□ -0.57
SKA1-205ENST00000494518 OR5M10Q6IEU7 315 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 SLC30A6Q6NXT4 461 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 LETMD1Q6P1Q0 360 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 NUP54Q7Z3B4 507 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 CAMKMTQ7Z624 323 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 MILR1Q7Z6M3 343 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 TRIM42Q8IWZ5 723 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 WDSUB1Q8N9V3 476 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 C17orf47Q8NEP4 570 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 ZPLD1Q8TCW7 415 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 SELENOMQ8WWX9 145 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 TMBIM1Q969X1 311 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 TM4SF18Q96CE8 201 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 NTNG2Q96CW9 530 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 NTMT1Q9BV86 223 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 JKAMPQ9P055 326 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 FBXL2Q9UKC9 423 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 ADAM29Q9UKF5 820 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 CSPG4Q6UVK1 2322 aa11.49□□□□□ -0.57
SKA1-205ENST00000494518 CCDC189A1A4V9 331 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 C1orf226A1L170 272 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 SH3D21A4FU49 640 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 REM1O75628 298 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 ESRRBO95718 433 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 IL18BPO95998 194 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 HRGP04196 525 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 RPS17P08708 135 aaKnown RBP11.48□□□□□ -0.57
SKA1-205ENST00000494518 CSNK2A2P19784 350 aaPredicted RBP11.48□□□□□ -0.57
SKA1-205ENST00000494518 MAP4K2Q12851 820 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 SYT10Q6XYQ8 523 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 IFNEQ86WN2 208 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 C1orf52Q8N6N3 182 aaKnown RBP11.48□□□□□ -0.57
SKA1-205ENST00000494518 UHMK1Q8TAS1 419 aaKnown RBP11.48□□□□□ -0.57
SKA1-205ENST00000494518 KAT2AQ92830 837 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 CNRIP1Q96F85 164 aaPredicted RBP11.48□□□□□ -0.57
SKA1-205ENST00000494518 SFXN2Q96NB2 322 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 G6PC3Q9BUM1 346 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 OR2B2Q9GZK3 357 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 ZDHHC18Q9NUE0 388 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 TAS2R10Q9NYW0 307 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 HEY2Q9UBP5 337 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 ZNF639Q9UID6 485 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 EXO1Q9UQ84 846 aaKnown RBP11.48□□□□□ -0.57
SKA1-205ENST00000494518 CFL2Q9Y281 166 aa11.48□□□□□ -0.57
SKA1-205ENST00000494518 STX16-NPEPL1H3BU86 382 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 PLOD2O00469 737 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 STX16O14662 325 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 ACOX3O15254 700 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 OR4F21O95013 312 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 ATP1B1P05026 303 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 INHBAP08476 426 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 RBP1P09455 135 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 CPN1P15169 458 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 CHN1P15882 459 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 NAGAP17050 411 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 CD53P19397 219 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 PHBP35232 272 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 EMDP50402 254 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 CORO7P57737 925 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 HMGCS1Q01581 520 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 LTBQ06643 244 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 C8orf74Q6P047 294 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 ENPP6Q6UWR7 440 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 KRTAP1-3Q8IUG1 177 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 GRAMD2AQ8IUY3 354 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 CCDC116Q8IYX3 515 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 OR9A2Q8NGT5 310 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 TRPC4APQ8TEL6 797 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 ZNF483Q8TF39 744 aaPredicted RBP11.47□□□□□ -0.57
SKA1-205ENST00000494518 EXOSC8Q96B26 276 aaKnown RBP11.47□□□□□ -0.57
SKA1-205ENST00000494518 COL21A1Q96P44 957 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 ADOQ96SZ5 270 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 TM9SF2Q99805 663 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 SFXN3Q9BWM7 321 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 ACSS3Q9H6R3 686 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 NEUROD4Q9HD90 331 aa11.47□□□□□ -0.57
SKA1-205ENST00000494518 C6orf203Q9P0P8 240 aaPredicted RBP11.47□□□□□ -0.57
SKA1-205ENST00000494518 CLCF1Q9UBD9 225 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms