RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PLGRKTQ9HBL7 147 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 SLC25A19Q9HC21 320 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 PALMDQ9NP74 551 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 FBXW2Q9UKT8 454 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CDV3Q9UKY7 258 aaKnown RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 C19orf53Q9UNZ5 99 aaPredicted RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 MDC1Q14676 2089 aaKnown RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 SNRNP200O75643 2136 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 BLACEA4D250 179 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OR6C74A6NCV1 312 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OR5K3A6NET4 321 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 H0YGG7 62 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 CYR61O00622 381 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 P2RX6O15547 441 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SH3BP5O60239 455 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 PLOD3O60568 738 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 PRKRAO75569 313 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 ERAL1O75616 437 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 TP53P04637 393 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 ATP1B1P05026 303 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 GSTM3P21266 225 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 FUT4P22083 530 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 CPN2P22792 545 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 CALRP27797 417 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 LIMK1P53667 647 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 RAB15P59190 212 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 ARF3P61204 181 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 HPCAP84074 193 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 EFNB1P98172 346 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 IL1RL1Q01638 556 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 PIGFQ07326 219 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 RUNX2Q13950 521 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SEC23BQ15437 767 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OCLNQ16625 522 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SMN1Q16637 294 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 FAM214AQ32MH5 1076 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 C11orf91Q3C1V1 193 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 ZNF829Q3KNS6 432 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 ARHGAP11BQ3KRB8 267 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 ZNF628Q5EBL2 1059 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 ATAD3BQ5T9A4 648 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 NIPAL1Q6NVV3 410 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 PGBD2Q6P3X8 592 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 RD3Q7Z3Z2 195 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 C17orf82Q86X59 251 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 CCDC103Q8IW40 242 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SLC44A2Q8IWA5 706 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 SDR16C5Q8N3Y7 309 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 MORN4Q8NDC4 146 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 FAM46DQ8NEK8 389 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OR9Q2Q8NGE9 314 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OR5D16Q8NGK9 328 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OR9A2Q8NGT5 310 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 OR52J3Q8NH60 311 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 FAM81AQ8TBF8 368 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 TBC1D15Q8TC07 691 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SLC7A13Q8TCU3 470 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 HMGB4Q8WW32 186 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 GGHQ92820 318 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 VMP1Q96GC9 406 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 TOE1Q96GM8 510 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 Q96MT0 163 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 MACROD1Q9BQ69 325 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 COPS4Q9BT78 406 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SAP130Q9H0E3 1048 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 RACGAP1Q9H0H5 632 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 TRIM45Q9H8W5 580 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 MTHFD2LQ9H903 347 aaPredicted RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 ANKHQ9HCJ1 492 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 MAN2C1Q9NTJ4 1040 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 EVA1BQ9NVM1 165 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 SATB2Q9UPW6 733 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 KLHL20Q9Y2M5 609 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 IFT52Q9Y366 437 aa10.07□□□□□ -0.8
USP4-214ENST00000491791 TPRP12270 2363 aaKnown RBP10.07□□□□□ -0.8
USP4-214ENST00000491791 EFCAB10A6NFE3 127 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 GLOD5A6NK44 160 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 GALR3O60755 368 aaPredicted RBP10.06□□□□□ -0.8
USP4-214ENST00000491791 GPR75O95800 540 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 BCL10O95999 233 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 THBS1P07996 1170 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 THEGLP0DJG4 465 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 CPMP14384 443 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 PORP16435 677 aaPredicted RBP10.06□□□□□ -0.8
USP4-214ENST00000491791 POLR2CP19387 275 aaPredicted RBP10.06□□□□□ -0.8
USP4-214ENST00000491791 SOX18P35713 384 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 FEN1P39748 380 aaKnown RBP10.06□□□□□ -0.8
USP4-214ENST00000491791 MC3RP41968 323 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 FASLGP48023 281 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 LSSP48449 732 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 XKP51811 444 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 DUSP8Q13202 625 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 LASP1Q14847 261 aaKnown RBP10.06□□□□□ -0.8
USP4-214ENST00000491791 CYP27C1Q4G0S4 372 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 MEDAGQ5VYS4 303 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 C19orf48Q6RUI8 117 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 TMEM107Q6UX40 140 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 MED25Q71SY5 747 aa10.06□□□□□ -0.8
USP4-214ENST00000491791 COMTD1Q86VU5 262 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms