RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PRPS1L1P21108 318 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 CNR1P21554 472 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 EPHA3P29320 983 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 PPICP45877 212 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 KCNJ2P63252 427 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 SRSF1Q07955 248 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP4-212ENST00000486549 NTRK2Q16620 822 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 PGS1Q32NB8 556 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 NXNQ6DKJ4 435 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 NPSR1Q6W5P4 371 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 GK5Q6ZS86 529 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 LARP4Q71RC2 724 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP4-212ENST00000486549 WDR53Q7Z5U6 358 aaPredicted RBP13.58□□□□□ -0.24
USP4-212ENST00000486549 SLC44A2Q8IWA5 706 aaPredicted RBP13.58□□□□□ -0.24
USP4-212ENST00000486549 OR2L13Q8N349 312 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 FBXW8Q8N3Y1 598 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 POGLUT1Q8NBL1 392 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 PAQR8Q8TEZ7 354 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 DIO2Q92813 273 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 OMA1Q96E52 524 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 ELP4Q96EB1 424 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 HSPBAP1Q96EW2 488 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 VSTM2LQ96N03 204 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 BTBD9Q96Q07 612 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 PRPF18Q99633 342 aaKnown RBP13.58□□□□□ -0.24
USP4-212ENST00000486549 FAM173AQ9BQD7 235 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 SH2D2AQ9NP31 389 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 EQTNQ9NQ60 294 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 ATAD3AQ9NVI7 634 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 TUBA8Q9NY65 449 aaPredicted RBP13.58□□□□□ -0.24
USP4-212ENST00000486549 OSGIN2Q9Y236 505 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 GPR55Q9Y2T6 319 aaPredicted RBP13.58□□□□□ -0.24
USP4-212ENST00000486549 CHCHD2Q9Y6H1 151 aaPredicted RBP13.58□□□□□ -0.24
USP4-212ENST00000486549 SLCO1B7G3V0H7 640 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 ACOX3O15254 700 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 HS6ST1O60243 411 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 PPM1BO75688 479 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 DRD5P21918 477 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 FRKP42685 505 aaPredicted RBP13.57□□□□□ -0.24
USP4-212ENST00000486549 PRKAG1P54619 331 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 NME5P56597 212 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 CLDN8P56748 225 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 SLC9B1Q4ZJI4 515 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 BICRALQ6AI39 1079 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 DESI1Q6ICB0 168 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 MAVSQ7Z434 540 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 SIAH3Q8IW03 269 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 RIMKLAQ8IXN7 391 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 SLC34A3Q8N130 599 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 ZFP62Q8NB50 900 aaPredicted RBP13.57□□□□□ -0.24
USP4-212ENST00000486549 PIWIL2Q8TC59 973 aaKnown RBP13.57□□□□□ -0.24
USP4-212ENST00000486549 TMBIM1Q969X1 311 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 JSRP1Q96MG2 331 aaPredicted RBP13.57□□□□□ -0.24
USP4-212ENST00000486549 GPR137Q96N19 417 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 TTTY12Q9BZ98 90 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 DPY30Q9C005 99 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 SLCO1B3Q9NPD5 702 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 ACSS1Q9NUB1 689 aaPredicted RBP13.57□□□□□ -0.24
USP4-212ENST00000486549 CNIH4Q9P003 139 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 SLC5A6Q9Y289 635 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 OR10H1Q9Y4A9 318 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 PTPN13Q12923 2485 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 NINQ8N4C6 2090 aa13.57□□□□□ -0.24
USP4-212ENST00000486549 A0A1W2PRB8 838 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 ACOT7O00154 380 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 CDC40O60508 579 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP4-212ENST00000486549 REM1O75628 298 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 C6orf47O95873 294 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 ABCB1P08183 1280 aaPredicted RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 ALDOCP09972 364 aaKnown RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 CT45A8P0DMV1 189 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 CT45A9P0DMV2 189 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 KRT20P35900 424 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 PER3P56645 1201 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 PPIAP62937 165 aaKnown RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 RPP38P78345 283 aaKnown RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 HSF1Q00613 529 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 CT45A2Q5DJT8 189 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 LRRC34Q8IZ02 419 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 OR4N2Q8NGD1 307 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 FBXO30Q8TB52 745 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 SPPL2AQ8TCT8 520 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 C7orf26Q96N11 449 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 DOHHQ9BU89 302 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 DUSP26Q9BV47 211 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 RYDENQ9NUL5 291 aaKnown RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 CNOT11Q9UKZ1 510 aaKnown RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 SNX8Q9Y5X2 465 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.56□□□□□ -0.24
USP4-212ENST00000486549 DOPEY2Q9Y3R5 2298 aa13.56□□□□□ -0.24
USP4-212ENST00000486549 HIVEP3Q5T1R4 2406 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 NCKAP5O14513 1909 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 TO15178 435 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 CFLARO15519 480 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 ZNHIT1O43257 154 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 ASNA1O43681 348 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 DIAPH2O60879 1101 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 UGT2B11O75310 529 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 PSMG1O95456 288 aa13.55□□□□□ -0.24
USP4-212ENST00000486549 NAGAP17050 411 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms