RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 UTS2RQ9UKP6 389 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 PSME2Q9UL46 239 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 CLCA1A8K7I4 914 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 PPP6CO00743 305 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 ACOX3O15254 700 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 REM1O75628 298 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 RAF1P04049 648 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 RHOXF2BP0C7M4 288 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 IL12BP29460 328 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 HMOX2P30519 316 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 SOX18P35713 384 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 KRT20P35900 424 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 PTGDSP41222 190 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 MAP4K2Q12851 820 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 TRMT12Q53H54 448 aaKnown RBP13.21□□□□□ -0.29
SDC1-204ENST00000429035 POMZP3Q6PJE2 187 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 ENPP6Q6UWR7 440 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 GRAMD2AQ8IUY3 354 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 CDYL2Q8N8U2 506 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 CDC26Q8NHZ8 85 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 IFT81Q8WYA0 676 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 KAT2AQ92830 837 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 TMBIM1Q969X1 311 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 ISL2Q96A47 359 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 EXOSC8Q96B26 276 aaKnown RBP13.21□□□□□ -0.29
SDC1-204ENST00000429035 TM4SF18Q96CE8 201 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 CNRIP1Q96F85 164 aaPredicted RBP13.21□□□□□ -0.29
SDC1-204ENST00000429035 POM121Q96HA1 1249 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 SFXN2Q96NB2 322 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 FMO2Q99518 471 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 MRPL57Q9BQC6 102 aaKnown RBP13.21□□□□□ -0.29
SDC1-204ENST00000429035 BRF2Q9HAW0 419 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 NMRK1Q9NWW6 199 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 TRPS1Q9UHF7 1281 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 CES1P1Q9UKY3 287 aa13.21□□□□□ -0.29
SDC1-204ENST00000429035 ZNF469Q96JG9 3925 aaPredicted RBP13.21□□□□□ -0.3
SDC1-204ENST00000429035 GNG14A0A1W2PPG7 69 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 FRG2CA6NGY1 282 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 PCDH7O60245 1069 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 NME6O75414 186 aaPredicted RBP13.2□□□□□ -0.3
SDC1-204ENST00000429035 URI1O94763 535 aaPredicted RBP13.2□□□□□ -0.3
SDC1-204ENST00000429035 SUPT7LO94864 414 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 IL3P08700 152 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 EPXP11678 715 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 NAGAP17050 411 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 SLCO1A2P46721 670 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 STARP49675 285 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 DCAF7P61962 342 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 SORDQ00796 357 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 MGAT2Q10469 447 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 ZNF155Q12901 538 aaPredicted RBP13.2□□□□□ -0.3
SDC1-204ENST00000429035 FOXF2Q12947 444 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 ERCC6LQ2NKX8 1250 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 OR5M10Q6IEU7 315 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 P4HA3Q7Z4N8 544 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 TRIM42Q8IWZ5 723 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 CCDC116Q8IYX3 515 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 OR9A2Q8NGT5 310 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 INTS12Q96CB8 462 aaKnown RBP13.2□□□□□ -0.3
SDC1-204ENST00000429035 TMCO6Q96DC7 493 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 C16orf45Q96MC5 204 aaPredicted RBP13.2□□□□□ -0.3
SDC1-204ENST00000429035 COL21A1Q96P44 957 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 ALPK1Q96QP1 1244 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 SFXN3Q9BWM7 321 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 EBPLQ9BY08 206 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 OR2B2Q9GZK3 357 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 CALHM2Q9HA72 323 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 GIMAP4Q9NUV9 329 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 GALNT8Q9NY28 637 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 TAS2R10Q9NYW0 307 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 HEY2Q9UBP5 337 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 RPH3AQ9Y2J0 694 aaPredicted RBP13.2□□□□□ -0.3
SDC1-204ENST00000429035 WIF1Q9Y5W5 379 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 ACANP16112 2415 aa13.2□□□□□ -0.3
SDC1-204ENST00000429035 HRNRQ86YZ3 2850 aaPredicted RBP13.19□□□□□ -0.3
SDC1-204ENST00000429035 NAV3Q8IVL0 2385 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 FAM221AA4D161 298 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 MANBAO00462 879 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 CBR3O75828 277 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 IL18BPO95998 194 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 KRT6AP02538 564 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 KRT6BP04259 564 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 COL6A2P12110 1019 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 CHN1P15882 459 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 TAC1P20366 129 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 KRT6CP48668 564 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 EMDP50402 254 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 CORO7P57737 925 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 CLCQ05315 142 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 SNTA1Q13424 505 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 SH2D4BQ5SQS7 431 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 TMEM81Q6P7N7 255 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 OR4K17Q8NGC6 315 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 ZPLD1Q8TCW7 415 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 DCAKDQ8WVC6 231 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 DTNBP1Q96EV8 351 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 ADOQ96SZ5 270 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 GSX1Q9H4S2 264 aaPredicted RBP13.19□□□□□ -0.3
SDC1-204ENST00000429035 VPS29Q9UBQ0 182 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 ZNF639Q9UID6 485 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms