RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SLC38A3Q99624 504 aa9.31□□□□□ -0.92
USP54-205ENST00000424265 CD84Q9UIB8 345 aa9.31□□□□□ -0.92
USP54-205ENST00000424265 PURGQ9UJV8 347 aaKnown RBP9.31□□□□□ -0.92
USP54-205ENST00000424265 SARDHQ9UL12 918 aa9.31□□□□□ -0.92
USP54-205ENST00000424265 MICAL3Q7RTP6 2002 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ACOD1A6NK06 481 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 SNAPC5O75971 98 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 GADD45GO95257 159 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MT-CO1P00395 513 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 HRGP04196 525 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 CAPNS1P04632 268 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 KCNAB2Q13303 367 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 NR6A1Q15406 480 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 DDI2Q5TDH0 399 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 KCTD11Q693B1 232 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 LRRN1Q6UXK5 716 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 EPHX4Q8IUS5 362 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 YIPF6Q96EC8 236 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 DERL2Q9GZP9 239 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 PDFQ9HBH1 243 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 HEBP1Q9NRV9 189 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 IL17CQ9P0M4 197 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 WNT16Q9UBV4 365 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ZMIZ1Q9ULJ6 1067 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 COLQQ9Y215 455 aaPredicted RBP9.3□□□□□ -0.92
USP54-205ENST00000424265 SERPINA3P01011 423 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 C6P13671 934 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 TNFRSF17Q02223 184 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 GK2Q14410 553 aaPredicted RBP9.3□□□□□ -0.92
USP54-205ENST00000424265 TRMT10BQ6PF06 316 aaKnown RBP9.3□□□□□ -0.92
USP54-205ENST00000424265 ZSCAN1Q8NBB4 408 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 OR2A12Q8NGT7 310 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 POC1BQ8TC44 478 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 AP3S1Q92572 193 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 GAL3ST3Q96A11 431 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MID1IP1Q9NPA3 183 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 A0A1W2PQU0 124 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MID1O15344 667 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 HNRNPA2B1P22626 353 aaKnown RBP9.3□□□□□ -0.92
USP54-205ENST00000424265 KCNJ3P48549 501 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ITGA1P56199 1179 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ASAH1Q13510 395 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 USP53Q70EK8 1073 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 TAF8Q7Z7C8 310 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 NAA40Q86UY6 237 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MS4A15Q8N5U1 240 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 PHF21BQ96EK2 531 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 CDX2Q99626 313 aaPredicted RBP9.3□□□□□ -0.92
USP54-205ENST00000424265 SNTG1Q9NSN8 517 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 SPASTQ9UBP0 616 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 WDR81Q562E7 1941 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 SLC22A23A1A5C7 686 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 NPHS1O60500 1241 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 EFEMP2O95967 443 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 STSP08842 583 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 RAC2P15153 192 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ARSBP15848 533 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 NCK1P16333 377 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MASP1P48740 699 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 RBP2P50120 134 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 TAS2R39P59534 338 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 TMEM52BQ4KMG9 183 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 Q6ZVL8 140 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 GJD3Q8N144 294 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ZNF321PQ8N8H1 164 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 CHST14Q8NCH0 376 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 OR8D4Q8NGM9 314 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 SORCS1Q8WY21 1168 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MAP3K3Q99759 626 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 SLC17A9Q9BYT1 436 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 ESRP2Q9H6T0 727 aaKnown RBP9.3□□□□□ -0.92
USP54-205ENST00000424265 C19orf12Q9NSK7 152 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 MMP17Q9ULZ9 603 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 STUB1Q9UNE7 303 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 PADI2Q9Y2J8 665 aa9.3□□□□□ -0.92
USP54-205ENST00000424265 PRAMEF26H0Y7S4 382 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TEX46H3BTG2 121 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 SMAD6O43541 496 aaKnown RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 TGFBR1P36897 503 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 RFC3P40938 356 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 SMSP52788 366 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 MICAQ29983 383 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 ATP6AP1LQ52LC2 224 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TMEM150AQ86TG1 271 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 C17orf64Q86WR6 236 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TP53INP2Q8IXH6 220 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 PCED1AQ9H1Q7 454 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 GNG14A0A1W2PPG7 69 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 HRO43593 1189 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 STK16O75716 305 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 SERPIND1P05546 499 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 SDC2P34741 201 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TCTE1Q5JU00 501 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 TMEM31Q5JXX7 168 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 MAVSQ7Z434 540 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CFAP206Q8IYR0 622 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 MOSPD2Q8NHP6 518 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 C3orf49Q96BT1 292 aa9.29□□□□□ -0.92
USP54-205ENST00000424265 CCNL2Q96S94 520 aaPredicted RBP9.29□□□□□ -0.92
USP54-205ENST00000424265 GALNT9Q9HCQ5 603 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms