RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR51V1Q9H2C8 321 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 FBXO34Q9NWN3 711 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 PAIP2BQ9ULR5 123 aaKnown RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 CLCA3PQ9Y6N3 262 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 HSPE1-MOB4S4R3N1 261 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 LOC105369274A0A096LPK9 316 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 LOC102723532A0A0G2JNH3 316 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 C2orf92A0A1B0GVN3 265 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 OR6C74A6NCV1 312 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 AP3D1O14617 1153 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 CSO75390 466 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 CSNK2A2P19784 350 aaPredicted RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 KCNJ5P48544 419 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 EIF4HQ15056 248 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 TBCEQ15813 527 aaPredicted RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 RPE65Q16518 533 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 TRMT12Q53H54 448 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 SDE2Q6IQ49 451 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 CDC73Q6P1J9 531 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 OR4N4Q8N0Y3 316 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 BBS1Q8NFJ9 593 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 KBTBD8Q8NFY9 601 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 CAPSLQ8WWF8 208 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 RLN3Q8WXF3 142 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 OR1E3Q8WZA6 343 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 MS4A6EQ96DS6 147 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 NDRG2Q9UN36 371 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 MDC1Q14676 2089 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 FRYLO94915 3013 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 GYPBP06028 91 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 ATP5A1P25705 553 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 RUNX1T1Q06455 604 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 HNRNPA0Q13151 305 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 APOOQ9BUR5 198 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 MAPRE3Q9UPY8 281 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 MTCL1Q9Y4B5 1905 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 MYL12AP19105 171 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 COL9A1P20849 921 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 PSMA1P25786 263 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 ETV5P41161 510 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 ETV1P50549 477 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 OXA1LQ15070 435 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 TMEM52BQ4KMG9 183 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 AMIGO1Q86WK6 493 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 RASGRP3Q8IV61 690 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 SLC30A8Q8IWU4 369 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 CYB561A3Q8NBI2 242 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 TEX47Q8TBZ9 253 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 HERVK_113Q902F9 699 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 OR7D2Q96RA2 312 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 YIPF2Q9BWQ6 316 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 TCEAL2Q9H3H9 227 aaPredicted RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 EPHX3Q9H6B9 360 aa12.59□□□□□ -0.39
VPS54-203ENST00000409558 MRPS2Q9Y399 296 aaKnown RBP12.59□□□□□ -0.39
VPS54-203ENST00000409558 AGAP5A6NIR3 686 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 HBQ1P09105 142 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 TRHRP34981 398 aaPredicted RBP12.58□□□□□ -0.39
VPS54-203ENST00000409558 REEP5Q00765 189 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 ZNF658BQ4V348 819 aaPredicted RBP12.58□□□□□ -0.39
VPS54-203ENST00000409558 TMEM196Q5HYL7 178 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 ATAD3BQ5T9A4 648 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 DENND6BQ8NEG7 585 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 OR51A7Q8NH64 312 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 GOT1L1Q8NHS2 421 aaPredicted RBP12.58□□□□□ -0.39
VPS54-203ENST00000409558 FBLIM1Q8WUP2 373 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 TMEM255BQ8WV15 326 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 CNDP2Q96KP4 475 aaKnown RBP12.58□□□□□ -0.39
VPS54-203ENST00000409558 C19orf43Q9BQ61 176 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 FTSJ1Q9UET6 329 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 A4GNTQ9UNA3 340 aa12.58□□□□□ -0.39
VPS54-203ENST00000409558 A0A087WUU8 490 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 METTL15A6NJ78 407 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 ZAR1LA6NP61 321 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 PRG2P13727 222 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 CELP19835 753 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 RCVRNP35243 200 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 AHRP35869 848 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 PPP5CP53041 499 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 ARMC4Q5T2S8 1044 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 UBE2UQ5VVX9 321 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 CCBE1Q6UXH8 406 aaPredicted RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 ABI3BPQ7Z7G0 1075 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 COX14Q96I36 57 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 NEDD4LQ96PU5 975 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 TRNT1Q96Q11 434 aaKnown RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 SEMA4GQ9NTN9 838 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 TSC22D4Q9Y3Q8 395 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 GMEB1Q9Y692 573 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 LRRK1Q38SD2 2015 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 MAGEB4O15481 346 aaPredicted RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 PDE9AO76083 593 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 C1DQ13901 141 aaKnown RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 C1orf53Q5VUE5 145 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 ABHD17CQ6PCB6 329 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 FAM131AQ6UXB0 335 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 LYSMD2Q8IV50 215 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 OR51G2Q8NGK0 314 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 MTIF3Q9H2K0 278 aaKnown RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 SLC28A3Q9HAS3 691 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 THSD1Q9NS62 852 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms