RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MAN2B2Q9Y2E5 1009 aa11.28□□□□□ -0.6
USP1-201ENST00000339950 OR10H1Q9Y4A9 318 aa11.28□□□□□ -0.6
USP1-201ENST00000339950 ATG4BQ9Y4P1 393 aa11.28□□□□□ -0.6
USP1-201ENST00000339950 NCOR1O75376 2440 aa11.28□□□□□ -0.6
USP1-201ENST00000339950 SDK2Q58EX2 2172 aa11.28□□□□□ -0.6
USP1-201ENST00000339950 ZDBF2Q9HCK1 2354 aa11.28□□□□□ -0.6
USP1-201ENST00000339950 ISPDA4D126 451 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 TMEM221A6NGB7 291 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 RAD1O60671 282 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 HPGDSO60760 199 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 HPGDP15428 266 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 CSNK2A2P19784 350 aaPredicted RBP11.27□□□□□ -0.6
USP1-201ENST00000339950 EIF2DP41214 584 aaKnown RBP11.27□□□□□ -0.6
USP1-201ENST00000339950 PRSS53Q2L4Q9 553 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 WSCD2Q2TBF2 565 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 MFSD4AQ8N468 514 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 ZNF557Q8N988 423 aaPredicted RBP11.27□□□□□ -0.6
USP1-201ENST00000339950 NEIL3Q8TAT5 605 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 TRMT2BQ96GJ1 504 aaKnown RBP11.27□□□□□ -0.6
USP1-201ENST00000339950 CNDP2Q96KP4 475 aaKnown RBP11.27□□□□□ -0.6
USP1-201ENST00000339950 CACNA1GO43497 2377 aa11.27□□□□□ -0.6
USP1-201ENST00000339950 PTPRZ1P23471 2315 aaPredicted RBP11.27□□□□□ -0.61
USP1-201ENST00000339950 A0A1W2PQU0 124 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 OTOL1A6NHN0 477 aaPredicted RBP11.27□□□□□ -0.61
USP1-201ENST00000339950 METTL15A6NJ78 407 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 SNTNA6NMZ2 147 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 SCN2BO60939 215 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 YES1P07947 543 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 DRD5P21918 477 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 ALAS2P22557 587 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 PTPN6P29350 595 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 ERV3-1Q14264 604 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 BTBD16Q32M84 506 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 FAM27D1Q5T7N8 215 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 HENMT1Q5T8I9 393 aaKnown RBP11.27□□□□□ -0.61
USP1-201ENST00000339950 MZT2BQ6NZ67 158 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 TECPR1Q7Z6L1 1165 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 NUP43Q8NFH3 380 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 PATE1Q8WXA2 126 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 UFD1Q92890 307 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 PMEPA1Q969W9 287 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 YIPF6Q96EC8 236 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 LRRC3BQ96PB8 259 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 MAPKAP1Q9BPZ7 522 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 ZNF559Q9BR84 538 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 BHLHE41Q9C0J9 482 aaPredicted RBP11.27□□□□□ -0.61
USP1-201ENST00000339950 C3orf14Q9HBI5 128 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 WDR45Q9Y484 360 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 MYLKQ15746 1914 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 A0A075B6Q4 140 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 DAPL1A0PJW8 107 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 H0YIV9 168 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 TEX46H3BTG2 121 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 RNASET2O00584 256 aaKnown RBP11.27□□□□□ -0.61
USP1-201ENST00000339950 SLCO2B1O94956 709 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 GCGRP47871 477 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 PRLHRP49683 370 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 BAK1Q16611 211 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 TCTN3Q6NUS6 607 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 Q6ZNB5 142 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 SERPINA12Q8IW75 414 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 CDK20Q8IZL9 346 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 SAMD12Q8N8I0 201 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 SIMC1Q8NDZ2 872 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 OR52L1Q8NGH7 329 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 PIGXQ8TBF5 258 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 SRMSQ9H3Y6 488 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 KCMF1Q9P0J7 381 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 ENOPH1Q9UHY7 261 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 NOX1Q9Y5S8 564 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 MYO16Q9Y6X6 1858 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 ASXL3Q9C0F0 2248 aa11.27□□□□□ -0.61
USP1-201ENST00000339950 KCNE1BA0A087WTH5 132 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 CHURC1-FNTBB4DL54 471 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 KCNK2O95069 426 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 OSMP13725 252 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 UQCRC1P31930 480 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 MMP12P39900 470 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 SLC7A9P82251 487 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 PUM1Q14671 1186 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP1-201ENST00000339950 MPEG1Q2M385 716 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 AGAP7PQ5VUJ5 663 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 FGD2Q7Z6J4 655 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 PDZD3Q86UT5 571 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 CCDC28AQ8IWP9 274 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 Q8N402 240 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 COX18Q8N8Q8 333 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 OR52P1PQ8NH57 321 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 C6orf106Q9H6K1 298 aaPredicted RBP11.26□□□□□ -0.61
USP1-201ENST00000339950 SLC35C2Q9NQQ7 365 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 SPATA6Q9NWH7 488 aaPredicted RBP11.26□□□□□ -0.61
USP1-201ENST00000339950 ANKRD61A6NGH8 418 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 PAHP00439 452 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 HLA-DQA2P01906 255 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 MMP11P24347 488 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 PYCR1P32322 319 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 CD79BP40259 229 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 SOX2P48431 317 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 GIPRP48546 466 aa11.26□□□□□ -0.61
USP1-201ENST00000339950 HCCSP53701 268 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms