RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C1orf226A1L170 272 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 FAM187AA6NFU0 413 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 OR6C70A6NIJ9 312 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 TO15178 435 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 TNFSF13O75888 250 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 KLK1P06870 262 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 CSNK2A2P19784 350 aaPredicted RBP13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 DRD5P21918 477 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 GMPRP36959 345 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ARL1P40616 181 aaPredicted RBP13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 PTGDSP41222 190 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 NEK2P51955 445 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 CCNG1P51959 295 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 MAPK12P53778 367 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 FGFBP1Q14512 234 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ACKR1Q16570 336 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 PRICKLE4Q2TBC4 344 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 FRG2Q64ET8 278 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 TTC19Q6DKK2 380 aaPredicted RBP13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 SLC48A1Q6P1K1 146 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 P4HA3Q7Z4N8 544 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 YTHDF3Q7Z739 585 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 CENPLQ8N0S6 344 aaPredicted RBP13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 WDSUB1Q8N9V3 476 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 KCTD4Q8WVF5 259 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ATP6V1E2Q96A05 226 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 CTHRC1Q96CG8 243 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 Q96MF0 132 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 SFXN2Q96NB2 322 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 FRG2BQ96QU4 278 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 SLC39A3Q9BRY0 314 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ERP44Q9BS26 406 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 MED18Q9BUE0 208 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 G6PC3Q9BUM1 346 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ITPAQ9BY32 194 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 BRINP2Q9C0B6 783 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ELOVL5Q9NYP7 299 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 MAT2BQ9NZL9 334 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 ZNF639Q9UID6 485 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 DTX4Q9Y2E6 619 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 PCDHA9Q9Y5H5 950 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 MXRA5Q9NR99 2828 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 FRG2CA6NGY1 282 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 HCRTR2O43614 444 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 UGT2B11O75310 529 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 BCAS2O75934 225 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 SMNDC1O75940 238 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 ZNF708P17019 499 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 CRYGSP22914 178 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 CNTFP26441 200 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 CD79BP40259 229 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 GPX6P59796 221 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 HMGCS1Q01581 520 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 CAV1Q03135 178 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 IFT88Q13099 833 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 EFR3AQ14156 821 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 NNATQ16517 81 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 PRIMA1Q86XR5 153 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 RDH11Q8TC12 318 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 ERP27Q96DN0 273 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 COL21A1Q96P44 957 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 FAM111AQ96PZ2 611 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 NAPGQ99747 312 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 NTMT1Q9BV86 223 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 DKKL1Q9UK85 242 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 CES1P1Q9UKY3 287 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 TMCO1Q9UM00 188 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 WIF1Q9Y5W5 379 aa13.39□□□□□ -0.27
CCDC88B-201ENST00000301897 SONP18583 2426 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 C2orf72A6NCS6 295 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 DEFB108AA8MXU0 73 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 ERAL1O75616 437 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 KLHL2O95198 593 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 PCSK6P29122 969 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 KRT20P35900 424 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 CLDN18P56856 261 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 EEFSECP57772 596 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 GNG11P61952 73 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 MRPS22P82650 360 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 FAM27E3Q08E93 113 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 MGAT2Q10469 447 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 EXOSC7Q15024 291 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 FAM111BQ6SJ93 734 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 METTL4Q8N3J2 472 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 CNEP1R1Q8N9A8 125 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 ADCY4Q8NFM4 1077 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 SPATA3Q8NHX4 192 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 CAVIN3Q969G5 261 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 STARD4Q96DR4 205 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 PIK3IP1Q96FE7 263 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 WFIKKN1Q96NZ8 548 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 FAIM2Q9BWQ8 316 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 MRPL1Q9BYD6 325 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 GSX2Q9BZM3 304 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 DPH5Q9H2P9 285 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 NOL11Q9H8H0 719 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 UBTD1Q9HAC8 227 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 NMRK1Q9NWW6 199 aa13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 C6orf203Q9P0P8 240 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-201ENST00000301897 CPSF2Q9P2I0 782 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms