RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PIH1D1Q9NWS0 290 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC2A8Q9NY64 477 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 COPZ2Q9P299 210 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 IL36AQ9UHA7 158 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 IKZF2Q9UKS7 526 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PREX1Q8TCU6 1659 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PZPP20742 1482 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C13orf42A0A1B0GVH6 325 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 C5orf60A6NFR6 353 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BBIP1A8MTZ0 92 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BTN3A1O00481 513 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TRDMT1O14717 391 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DFFBO76075 338 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DIRAS3O95661 229 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SMIM6P0DI80 62 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ADH5P11766 374 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ST6GAL1P15907 406 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FMO4P31512 558 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UQCRC1P31930 480 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MLF1P58340 268 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CXADRP78310 365 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 HTD2P86397 168 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TAGLNQ01995 201 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 EVX2Q03828 476 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM267Q0VDI3 215 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ST3GAL3Q11203 375 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RBM39Q14498 530 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF181Q2M3W8 571 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TSTD2Q5T7W7 516 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CORO6Q6QEF8 472 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ECHDC2Q86YB7 292 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF440Q8IYI8 595 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MRPL57Q9BQC6 102 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LRRC3Q9BY71 257 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CDC42EP4Q9H3Q1 356 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BARX1Q9HBU1 254 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PCDH9Q9HC56 1237 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CUTCQ9NTM9 273 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SERTAD4Q9NUC0 356 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LIN7CQ9NUP9 197 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NYAP2Q9P242 653 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MAGEL2Q9UJ55 1249 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ACOT9Q9Y305 439 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NDUFB9Q9Y6M9 179 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 A0A1B0GUH1 482 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PVALEFA0A1B0GWK0 134 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CST1P01037 141 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 F3P13726 295 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SHMT2P34897 504 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PTGER4P35408 488 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PPP3CAQ08209 521 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GPR176Q14439 515 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UGT3A2Q3SY77 523 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 VARS2Q5ST30 1063 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 COL13A1Q5TAT6 717 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MPZL3Q6UWV2 235 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TMED4Q7Z7H5 227 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM200AQ86VY9 491 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PQLC1Q8N2U9 271 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 GALNT11Q8NCW6 608 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 OR5T1Q8NG75 326 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 OR8J3Q8NGG0 315 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC44A1Q8WWI5 657 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PLD4Q96BZ4 506 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 KCTD7Q96MP8 289 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UHRF1Q96T88 793 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MAP3K14Q99558 947 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TBL1YQ9BQ87 522 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TGIF2Q9GZN2 237 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 TBC1D17Q9HA65 648 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 BLOC1S4Q9NUP1 217 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 UTP20O75691 2785 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZC3H13Q5T200 1668 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 A0A1B0GVM2 712 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SLC5A10A0PJK1 596 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ANKUB1A6NFN9 424 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 NCBP2LA6PVI3 153 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF99A8MXY4 864 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 H7C417 338 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 DSCR3O14972 297 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LCMT2O60294 686 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 SSTR1P30872 391 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RYKP34925 604 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CSN1S1P47710 185 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CXCR3P49682 368 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 AQP4P55087 323 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 ARFRP1Q13795 201 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CAPSQ13938 189 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LRP8Q14114 963 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FAM209AQ5JX71 171 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 LIPIQ6XZB0 460 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 FAM131BQ86XD5 332 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RAVER1Q8IY67 606 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 PLD6Q8N2A8 252 aaKnown RBP2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RNF148Q8N7C7 305 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CCDC71LQ8N9Z2 235 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 CYP2W1Q8TAV3 490 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 RAB8BQ92930 207 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 MRAP2Q96G30 205 aa2.66□□□□□ -1.98
SCN1A-219ENST00000641575 S1PR3Q99500 378 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms