RNA–Protein interactions for RNA: ENST00000612050.4

CBWD3-208, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,440 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-208ENST00000612050 DEPPQ9NTK1 212 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 DDX18Q9NVP1 670 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 TUBA8Q9NY65 449 aaPredicted RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 KLRF1Q9NZS2 232 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ACTL7BQ9Y614 415 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 FRG2CA6NGY1 282 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 E9PLN8 166 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 NPIPB8E9PQR5 432 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PDPK1O15530 556 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 SUSD5O60279 629 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 HCN1O60741 890 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ERN1O75460 977 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PPM1BO75688 479 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 CLPSP04118 112 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 JUNP05412 331 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 AGAP20933 346 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 GRK2P25098 689 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ELAVL4P26378 380 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 GDF1P27539 372 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 MAGEA5P43359 124 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PSMD4P55036 377 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 MRPS35P82673 323 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 HSF1Q00613 529 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZNF155Q12901 538 aaPredicted RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 EFR3AQ14156 821 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 SF3B4Q15427 424 aaKnown RBP eCLIP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 LTB4RQ15722 352 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 NNATQ16517 81 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 HYAL4Q2M3T9 481 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 TRMT12Q53H54 448 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZNF628Q5EBL2 1059 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 RNFT1Q5M7Z0 435 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 HHATQ5VTY9 493 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 FAM71E1Q6IPT2 247 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 FAM180BQ6P0A1 224 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZCCHC23Q6ZST2 131 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 CD163Q86VB7 1156 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 SLC34A3Q8N130 599 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 TMEM251Q8N6I4 163 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZNF441Q8N8Z8 693 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 OR52N2Q8NGI0 321 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 SPPL2AQ8TCT8 520 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PHF10Q8WUB8 498 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 KAT2AQ92830 837 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 CTHRC1Q96CG8 243 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 OMA1Q96E52 524 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 C11orf24Q96F05 449 aaPredicted RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZBED6CLQ96FA7 236 aaPredicted RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PGM2Q96G03 612 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 CCDC120Q96HB5 630 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZIM3Q96PE6 472 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PRPF18Q99633 342 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 PAIP2Q9BPZ3 127 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 VKORC1Q9BQB6 163 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 NXF5Q9H1B4 397 aaKnown RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZDHHC11Q9H8X9 412 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ATAD3AQ9NVI7 634 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 TAS2R7Q9NYW3 318 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 SH3BP4Q9P0V3 963 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ZNF639Q9UID6 485 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 ACAD8Q9UKU7 415 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 MAPRE3Q9UPY8 281 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 MEMO1Q9Y316 297 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 DNAJC15Q9Y5T4 150 aa11.35□□□□□ -0.59
CBWD3-208ENST00000612050 CHCHD2Q9Y6H1 151 aaPredicted RBP11.35□□□□□ -0.59
CBWD3-208ENST00000612050 A0A087WV62 115 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 TRGV5A0A0B4J1U4 118 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 TTC36A6NLP5 189 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 MYO1GB0I1T2 1018 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 FAM47E-STBD1D6RA91 191 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 PRSS44E7EML9 344 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 PIP5K1BO14986 540 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 TYROBPO43914 113 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 PLOD3O60568 738 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 REM1O75628 298 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 SERPINE1P05121 402 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 CHRNGP07510 517 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 SERPINB4P48594 390 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 CLK3P49761 638 aaKnown RBP11.34□□□□□ -0.59
CBWD3-208ENST00000612050 FBXW4P57775 412 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 SNTA1Q13424 505 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 ART3Q13508 389 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 CEBPEQ15744 281 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 VPS26BQ4G0F5 336 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 SLC30A6Q6NXT4 461 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 PRR22Q8IZ63 422 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 NATD1Q8N6N6 113 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 FNDC5Q8NAU1 212 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 TUBGCP3Q96CW5 907 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 MTERF3Q96E29 417 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 RILPQ96NA2 401 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 REEP4Q9H6H4 257 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 Q9N2J8 555 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 CHST11Q9NPF2 352 aa11.34□□□□□ -0.59
CBWD3-208ENST00000612050 EIF3LQ9Y262 564 aaKnown RBP11.34□□□□□ -0.59
CBWD3-208ENST00000612050 PRRC2CQ9Y520 2896 aaKnown RBP11.33□□□□□ -0.6
CBWD3-208ENST00000612050 WDR91A4D1P6 747 aa11.33□□□□□ -0.6
CBWD3-208ENST00000612050 PINLYPA6NC86 204 aa11.33□□□□□ -0.6
CBWD3-208ENST00000612050 NPIPA2E9PIF3 369 aa11.33□□□□□ -0.6
CBWD3-208ENST00000612050 NPIPA3F8WFD2 350 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms