RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	NDUFS4	O43181	175 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	IFNW1	P05000	195 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	CMPK1	P30085	196 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	SOX6	P35712	828 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	GSTM5	P46439	218 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	PCBP4	P57723	403 aa	Known RBP	13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	C1orf61	Q13536	156 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	TIMM50	Q3ZCQ8	353 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	FAM46D	Q8NEK8	389 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	ZNF764	Q96H86	408 aa	Predicted RBP	13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	CCDC32	Q9BV29	185 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	ABCG4	Q9H172	646 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	NEUROD4	Q9HD90	331 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	LHX9	Q9NQ69	397 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	ZNF226	Q9NYT6	803 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	KLF15	Q9UIH9	416 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	ADAM29	Q9UKF5	820 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	SLCO1B1	Q9Y6L6	691 aa		13.08	□□□□□ -0.31
COPS7B-223	ENST00000611614	CCDC163	A0A0D9SF12	145 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	ARRDC5	A6NEK1	342 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	RECK	O95980	971 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	GABRB1	P18505	474 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	TGFBR1	P36897	503 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	FRK	P42685	505 aa	Predicted RBP	13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	IDH2	P48735	452 aa	Known RBP	13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	DESI1	Q6ICB0	168 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	ZNF367	Q7RTV3	350 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	CCDC103	Q8IW40	242 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	CACTIN-AS1	Q8N1I8	211 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	OR2A1	Q8NGT9	310 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	ZNF675	Q8TD23	568 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	SLC38A5	Q8WUX1	472 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	GGH	Q92820	318 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	POT1	Q9NUX5	634 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	CPNE7	Q9UBL6	633 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	ENOPH1	Q9UHY7	261 aa		13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	13.08	□□□□□ -0.32
COPS7B-223	ENST00000611614	LAMTOR5	O43504	91 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	OR1F1	O43749	312 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	CSF2	P04141	144 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	BCHE	P06276	602 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	CBL	P22681	906 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	HOXA6	P31267	233 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SEPHS1	P49903	392 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	LIMK1	P53667	647 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	UGT2B15	P54855	530 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	RPS26	P62854	115 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	GANAB	Q14697	944 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	DUSP7	Q16829	419 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SPDYE7P	Q495Y7	208 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	THOC7	Q6I9Y2	204 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	C6orf120	Q7Z4R8	191 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	UTP15	Q8TED0	518 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	OR2B2	Q9GZK3	357 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	KCND3	Q9UK17	655 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	PCDHGB6	Q9Y5F9	930 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614		A0A1W2PR77	199 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	TMPRSS11D	O60235	418 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SH3BP5	O60239	455 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	KRT8	P05787	483 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	NME1	P15531	152 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	ALOX12	P18054	663 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	BCKDHB	P21953	392 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	CSNK1G2	P78368	415 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	HSPB3	Q12988	150 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	IRF3	Q14653	427 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SF3B4	Q15427	424 aa	Known RBP eCLIP	13.07	□□□□□ -0.32	2e-6	■■■□□ 18
COPS7B-223	ENST00000611614	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SPANXN2	Q5MJ10	180 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	AGAP6	Q5VW22	663 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	CCBE1	Q6UXH8	406 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	UBE3D	Q7Z6J8	389 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	GKN2	Q86XP6	184 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SLC7A5P1	Q8MH63	180 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	FAM83F	Q8NEG4	500 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SETD6	Q8TBK2	473 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	APOBEC4	Q8WW27	367 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	JPH3	Q8WXH2	748 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	EDA	Q92838	391 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	EXOSC8	Q96B26	276 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	ZBED6CL	Q96FA7	236 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	TMEM19	Q96HH6	336 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	AGAP4	Q96P64	663 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	MAPKAP1	Q9BPZ7	522 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	TPK1	Q9H3S4	243 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SIAE	Q9HAT2	523 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	SIRT3	Q9NTG7	399 aa	Predicted RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	CFL2	Q9Y281	166 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	TRAPPC4	Q9Y296	219 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	RBMX2	Q9Y388	322 aa	Known RBP	13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	GRIP1	Q9Y3R0	1128 aa		13.07	□□□□□ -0.32
COPS7B-223	ENST00000611614	FAM172BP	A6NC97	362 aa		13.06	□□□□□ -0.32
COPS7B-223	ENST00000611614	BCAT2	O15382	392 aa	Predicted RBP	13.06	□□□□□ -0.32
COPS7B-223	ENST00000611614	PDE9A	O76083	593 aa		13.06	□□□□□ -0.32
COPS7B-223	ENST00000611614	PDGFB	P01127	241 aa	Predicted RBP	13.06	□□□□□ -0.32
COPS7B-223	ENST00000611614	WNT1	P04628	370 aa		13.06	□□□□□ -0.32
COPS7B-223	ENST00000611614	CHRM5	P08912	532 aa	Predicted RBP	13.06	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms