RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SAMD14Q8IZD0 417 aaPredicted RBP8.96□□□□□ -0.98
VRK3-216ENST00000599342 TMEM151AQ8N4L1 468 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 TNIP2Q8NFZ5 429 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ABTB1Q969K4 478 aaPredicted RBP8.96□□□□□ -0.98
VRK3-216ENST00000599342 DTNBP1Q96EV8 351 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 CNRIP1Q96F85 164 aaPredicted RBP8.96□□□□□ -0.98
VRK3-216ENST00000599342 TMEM237Q96Q45 408 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 TRIB1Q96RU8 372 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ZNF382Q96SR6 550 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 PRDM14Q9GZV8 571 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 GIMAP4Q9NUV9 329 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 TMEM216Q9P0N5 145 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SENP1Q9P0U3 644 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 MCM8Q9UJA3 840 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SLC6A5Q9Y345 797 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 APCP25054 2843 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 LRBAP50851 2863 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 DNAJC13O75165 2243 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 PRAMEF25A6NGN4 478 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 FRG2CA6NGY1 282 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 KIF2AO00139 706 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 SNPHO15079 494 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 ULK1O75385 1050 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 BCAS2O75934 225 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 CBX7O95931 251 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 IL3P08700 152 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 RHOXF2BP0C7M4 288 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 DRD2P14416 443 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 CD1EP15812 388 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 PCSK2P16519 638 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 BMP7P18075 431 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 ATP5F1P24539 256 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 PTPN6P29350 595 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 KRT20P35900 424 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 DLX5P56178 289 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 WNT3P56703 355 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 RIPPLY3P57055 190 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 MRPS35P82673 323 aaKnown RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 ACSM2AQ08AH3 577 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 MGAT2Q10469 447 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 SNTA1Q13424 505 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 HEPACAMQ14CZ8 416 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 TESK1Q15569 626 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 LTB4RQ15722 352 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 ERCC6LQ2NKX8 1250 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 EIPR1Q53HC9 387 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 UNC50Q53HI1 259 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 NHSL2Q5HYW2 709 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 NSUN5P2Q63ZY6 315 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 ACSM2BQ68CK6 577 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 VASNQ6EMK4 673 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 TMEM81Q6P7N7 255 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 SEM1Q6ZVN7 128 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 TRMT10CQ7L0Y3 403 aaKnown RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 IFT20Q8IY31 132 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 CNPY4Q8N129 248 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 GBP7Q8N8V2 638 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 RELL2Q8NC24 303 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 NAXEQ8NCW5 288 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 FAM83FQ8NEG4 500 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 METTL6Q8TCB7 284 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 RNASE6Q93091 150 aaKnown RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 HGDQ93099 445 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 CTHRC1Q96CG8 243 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 TMCO6Q96DC7 493 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 NODALQ96S42 347 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 UGT2B28Q9BY64 529 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 ACPTQ9BZG2 426 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 GALNT9Q9HCQ5 603 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 DNAJB12Q9NXW2 375 aaKnown RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 EHD3Q9NZN3 535 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 ZNF629Q9UEG4 869 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 ZNF639Q9UID6 485 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 FOXD3Q9UJU5 478 aaPredicted RBP8.95□□□□□ -0.98
VRK3-216ENST00000599342 ZNF225Q9UK10 706 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 MAPRE3Q9UPY8 281 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 DLGAP4Q9Y2H0 992 aa8.95□□□□□ -0.98
VRK3-216ENST00000599342 NCKAP5O14513 1909 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 CD8B2A6NJW9 211 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 EEF1E1-BLOC1S5C9J1V9 151 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 GOLGA8RI6L899 631 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 SYT5O00445 386 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 EEF1E1O43324 174 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 RIPK2O43353 540 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 DLX3O60479 287 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ABCB7O75027 752 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ICOSLGO75144 302 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 UGT2B11O75310 529 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 REM1O75628 298 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ACTL6AO96019 429 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 ENO1P06733 434 aaKnown RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 CHN1P15882 459 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 IMPDH1P20839 514 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 DRD5P21918 477 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 GCAP28676 217 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 IL12BP29460 328 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 TIA1P31483 386 aaKnown RBP eCLIP8.94□□□□□ -0.98
VRK3-216ENST00000599342 CEACAM8P31997 349 aaPredicted RBP8.94□□□□□ -0.98
VRK3-216ENST00000599342 PPICP45877 212 aa8.94□□□□□ -0.98
VRK3-216ENST00000599342 GSTM5P46439 218 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms