RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 PEX11AO75192 247 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 SH3BGRLO75368 114 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 CRLF1O75462 422 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 LBPP18428 481 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 CYB561P49447 251 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 RAE1P78406 368 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 EMX2Q04743 252 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 EXT1Q16394 746 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 AP5B1Q2VPB7 878 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 GXYLT1Q4G148 440 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 SPIN4Q56A73 249 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 PAPD4Q6PIY7 484 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 ZNF227Q86WZ6 799 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 KIF2BQ8N4N8 673 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 SRFBP1Q8NEF9 429 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 RGMAQ96B86 450 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 MVB12AQ96EY5 273 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 FAM107BQ9H098 131 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 RABEP2Q9H5N1 569 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 DDX31Q9H8H2 851 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 PLEKHF2Q9H8W4 249 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 MMP25Q9NPA2 562 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 TCF7L2Q9NQB0 619 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 ASIC5Q9NY37 505 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 AHSPQ9NZD4 102 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 ADAM29Q9UKF5 820 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 KLF13Q9Y2Y9 288 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 TMED5Q9Y3A6 229 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 FAM215AQ9Y5M1 114 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 CHD3Q12873 2000 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 FIGNL2A6NMB9 653 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 FAM166BA8MTA8 275 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 SAP18O00422 153 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 FOXS1O43638 330 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 PEX1O43933 1283 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 SEC22BO75396 215 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 SCELO95171 688 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 ZNF888P0CJ79 500 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 ERVK-8P63133 956 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 CBX1P83916 185 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 SF3A3Q12874 501 aaKnown RBP eCLIP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 FAM53BQ14153 422 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 ATP6AP1LQ52LC2 224 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 SFT2D3Q587I9 215 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 METTL21CQ5VZV1 264 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 OR4C11Q6IEV9 310 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 SPATA19Q7Z5L4 167 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 RPS19BP1Q86WX3 136 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 CXorf67Q86X51 503 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 C1orf52Q8N6N3 182 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 M1APQ8TC57 530 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 KCNC2Q96PR1 638 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 TBCDQ9BTW9 1192 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 HCN3Q9P1Z3 774 aa12.84□□□□□ -0.35
SHKBP1-218ENST00000598907 ANK3Q12955 4377 aaKnown RBP12.83□□□□□ -0.35
SHKBP1-218ENST00000598907 DNAJC13O75165 2243 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 KLRC4-KLRK1H3BQV0 150 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 RTCAO00442 366 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ERI3O43414 337 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ALDOCP09972 364 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ALOX12P18054 663 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ATP5A1P25705 553 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 TIA1P31483 386 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 PLA2G16P53816 162 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 RAB8AP61006 207 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 TGM3Q08188 693 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ACSM2AQ08AH3 577 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 MAD2L1Q13257 205 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 HERC3Q15034 1050 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 NDUFA9Q16795 377 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 GALNTL6Q49A17 601 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 SPDYAQ5MJ70 313 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ACSM2BQ68CK6 577 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 NOXRED1Q6NXP6 359 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 TRIM40Q6P9F5 258 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ZNF793Q6ZN11 406 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ABHD13Q7L211 337 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 COMMD6Q7Z4G1 85 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 PDSS2Q86YH6 399 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ZCCHC7Q8N3Z6 543 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ANKS4BQ8N8V4 417 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 BCAS4Q8TDM0 211 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 TMEM158Q8WZ71 300 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 CENPKQ9BS16 269 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 BDH2Q9BUT1 245 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 SORBS1Q9BX66 1292 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 RBCK1Q9BYM8 510 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ZNF385DQ9H6B1 395 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 PLSCR2Q9NRY7 297 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 MCM8Q9UJA3 840 aa12.83□□□□□ -0.36
SHKBP1-218ENST00000598907 ANK2Q01484 3957 aa12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 A0A0A6YYD5 115 aa12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 GALR3O60755 368 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 SMPD2O60906 423 aa12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 EEDO75530 441 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 B3GALT4O96024 378 aa12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 PCSK2P16519 638 aa12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 HIST1H1TP22492 207 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-218ENST00000598907 PEX19P40855 299 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms