RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 DCAF7P61962 342 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 RPS15P62841 145 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 MRPS35P82673 323 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 CDK6Q00534 326 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 EEF1A2Q05639 463 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 LASP1Q14847 261 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 MYBPC3Q14896 1274 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 COX20Q5RI15 118 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 GLYATQ6IB77 296 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 ZFP1Q6P2D0 407 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 FAM111BQ6SJ93 734 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 ANKRD37Q7Z713 158 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 CLEC4FQ8N1N0 589 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 ZNF615Q8N8J6 731 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 HIPK4Q8NE63 616 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 PNPT1Q8TCS8 783 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 ADAMTS15Q8TE58 950 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 WDR60Q8WVS4 1066 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 TSLPQ969D9 159 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 NCLNQ969V3 563 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 DUS3LQ96G46 650 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 SENP5Q96HI0 755 aaPredicted RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 NSMCE2Q96MF7 247 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 LMF2Q9BU23 707 aaKnown RBP14.24□□□□□ -0.13
SS18-215ENST00000580642 TRIM8Q9BZR9 551 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 RASSF4Q9H2L5 321 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 OR51I1Q9H343 314 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 BCL2L10Q9HD36 194 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 OLAHQ9NV23 265 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 DLL3Q9NYJ7 618 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 ANGPT4Q9Y264 503 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 CROCCQ5TZA2 2017 aa14.24□□□□□ -0.13
SS18-215ENST00000580642 NUP210LQ5VU65 1888 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 SAGE2PA6NJ88 616 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 GPIP06744 558 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 C8BP07358 591 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 ALOX5P09917 674 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 CT62P0C5K7 136 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 FOLR3P41439 243 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 CLDN6P56747 220 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 GABREP78334 506 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 RHDQ02161 417 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 SCARB2Q14108 478 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 ZNF267Q14586 743 aaPredicted RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 KPNB1Q14974 876 aaKnown RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 RTP5Q14D33 572 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 RSPO4Q2I0M5 234 aaPredicted RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 LCN10Q6JVE6 187 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 HEPHL1Q6MZM0 1159 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 REEP3Q6NUK4 255 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 SZRD1Q7Z422 152 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 CPEB2Q7Z5Q1 589 aaKnown RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 PATL1Q86TB9 770 aaKnown RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 HORMAD2Q8N7B1 307 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 FAM156AQ8NDB6 213 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 C17orf47Q8NEP4 570 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 OR52R1Q8NGF1 315 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 OR1N1Q8NGS0 311 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 OIT3Q8WWZ8 545 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 STMN2Q93045 179 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 MAGED4Q96JG8 741 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 TRNT1Q96Q11 434 aaKnown RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 OR7D2Q96RA2 312 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 LPAR4Q99677 370 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 PCDHAC1Q9H158 963 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 OR10A5Q9H207 317 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 SOX17Q9H6I2 414 aaPredicted RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 POLE3Q9NRF9 147 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 PNO1Q9NRX1 252 aaKnown RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 FOXJ2Q9P0K8 574 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 COPS7AQ9UBW8 275 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 KCND3Q9UK17 655 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 PACSIN3Q9UKS6 424 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 FARSAQ9Y285 508 aaKnown RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 PCDHGA6Q9Y5G7 932 aa14.23□□□□□ -0.13
SS18-215ENST00000580642 HEMK1Q9Y5R4 338 aaPredicted RBP14.23□□□□□ -0.13
SS18-215ENST00000580642 KNTC1P50748 2209 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 TCRBV3S1A0A5B6 114 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 C5orf58C9J3I9 102 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 MGRN1O60291 552 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 RAD1O60671 282 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 CNOT3O75175 753 aaKnown RBP14.22□□□□□ -0.13
SS18-215ENST00000580642 CREG1O75629 220 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 NKX2-2O95096 273 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 DDAH2O95865 285 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 MMP11P24347 488 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 KDELR2P33947 212 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 STAT5AP42229 794 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 EMDP50402 254 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 CLCN2P51788 898 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 EFNA3P52797 238 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 CRISP3P54108 245 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 SSPNQ14714 243 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 CRB2Q5IJ48 1285 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 TNFAIP8L2Q6P589 184 aaPredicted RBP14.22□□□□□ -0.13
SS18-215ENST00000580642 RNF111Q6ZNA4 994 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 DGAT2L6Q6ZPD8 337 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 TIPARPQ7Z3E1 657 aaKnown RBP14.22□□□□□ -0.13
SS18-215ENST00000580642 C10orf111Q8N326 155 aa14.22□□□□□ -0.13
SS18-215ENST00000580642 CHDHQ8NE62 594 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms