RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 Q9UFV3 132 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 MRPS18CQ9Y3D5 142 aaKnown RBP13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF780BQ9Y6R6 833 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 A0A1B0GTL3 188 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 FAM221AA4D161 298 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 OR6C70A6NIJ9 312 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 MANBAO00462 879 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 RIPK2O43353 540 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 ULK1O75385 1050 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 ACTL6AO96019 429 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 NT5EP21589 574 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 SOX18P35713 384 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 FBXW4P57775 412 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 LCP2Q13094 533 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 DUSP8Q13202 625 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 HEPACAMQ14CZ8 416 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 NSUN5P2Q63ZY6 315 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 SCIMPQ6UWF3 145 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 GPRIN3Q6ZVF9 776 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 CCDC71Q8IV32 467 aaPredicted RBP13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 KIF18AQ8NI77 898 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 FAM76AQ8TAV0 307 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 ZFP3Q96NJ6 502 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 BTBD9Q96Q07 612 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 UCN2Q96RP3 112 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 TIMP4Q99727 224 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 UCK2Q9BZX2 261 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 NXF5Q9H1B4 397 aaKnown RBP13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 EXO5Q9H790 373 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 CALHM2Q9HA72 323 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 TAS2R7Q9NYW3 318 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 DCDC2Q9UHG0 476 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 MED12Q93074 2177 aa13.27□□□□□ -0.29
SMARCE1-216ENST00000580419 NKX2-6A6NCS4 301 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 FRG2CA6NGY1 282 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 PPP6CO00743 305 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 DLX3O60479 287 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 PLOD3O60568 738 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 ESRRBO95718 433 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 CBX7O95931 251 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 IL18BPO95998 194 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 CPN1P15169 458 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 KRT15P19012 456 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 POU3F2P20265 443 aaPredicted RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 GDF1P27539 372 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 ADH7P40394 386 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 PCYT1AP49585 367 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 EMDP50402 254 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 CDH13P55290 713 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 EEF1A1P68104 462 aaKnown RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 ACSF3Q4G176 576 aaPredicted RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 UNC50Q53HI1 259 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 EEF1A1P5Q5VTE0 462 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 CDH24Q86UP0 819 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 C1orf52Q8N6N3 182 aaKnown RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 OR10Q1Q8NGQ4 319 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 ZPLD1Q8TCW7 415 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 RNF138Q8WVD3 245 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 NINJ1Q92982 152 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 HGDQ93099 445 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 UCN3Q969E3 161 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 CNRIP1Q96F85 164 aaPredicted RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 SLC35A4Q96G79 324 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 ZNF559Q9BR84 538 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 FARSBQ9NSD9 589 aaKnown RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 TMEM216Q9P0N5 145 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 EXO1Q9UQ84 846 aaKnown RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 GPR55Q9Y2T6 319 aaPredicted RBP13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 L3MBTL1Q9Y468 752 aa13.26□□□□□ -0.29
SMARCE1-216ENST00000580419 ZFHX3Q15911 3703 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 A0A1W2PS29 197 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MBD3L4A6NDZ8 208 aaPredicted RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MBD3L3A6NE82 208 aaPredicted RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MBD3L5A6NJ08 208 aaPredicted RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 FAM90A27PA6NNH2 459 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 NPIPB8E9PQR5 432 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 DVL2O14641 736 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 SNPHO15079 494 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 CBR3O75828 277 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 SUPT7LO94864 414 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 OR4F21O95013 312 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 PTPN6P29350 595 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MRPS22P82650 360 aaKnown RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 ZNF628Q5EBL2 1059 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 SEM1Q6ZVN7 128 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MBD3L2Q8NHZ7 208 aaPredicted RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 METTL6Q8TCB7 284 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MZB1Q8WU39 189 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.25□□□□□ -0.294e-8■■■■■ 36.3
SMARCE1-216ENST00000580419 KLHL29Q96CT2 875 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 ZNF764Q96H86 408 aaPredicted RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 TMEM237Q96Q45 408 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 SLC6A15Q9H2J7 730 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 PSMC3IPQ9P2W1 217 aaPredicted RBP13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 UTS2RQ9UKP6 389 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 GRID1Q9ULK0 1009 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 MED12LQ86YW9 2145 aa13.25□□□□□ -0.29
SMARCE1-216ENST00000580419 A0A087WV62 115 aa13.24□□□□□ -0.29
SMARCE1-216ENST00000580419 ERAL1O75616 437 aaKnown RBP13.24□□□□□ -0.29
SMARCE1-216ENST00000580419 CD1EP15812 388 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms