RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RPL37AP8A6NKH3 93 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 KRTAP16-1A8MUX0 517 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 TXNL1O43396 289 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 BUB1O43683 1085 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 PDGFBP01127 241 aaPredicted RBP3.79□□□□□ -1.8
LINC00560-201ENST00000564593 CGAP01215 116 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 GP9P14770 177 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 PPP2R1BP30154 601 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 MAT2AP31153 395 aaKnown RBP3.79□□□□□ -1.8
LINC00560-201ENST00000564593 PRDX2P32119 198 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 CD86P42081 329 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 GSK3BP49841 420 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 SPP2Q13103 211 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 CEBPEQ15744 281 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 INAQ16352 499 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 LDLRAP1Q5SW96 308 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 C9orf66Q5T8R8 295 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 Q8N377 158 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 FAM71CQ8NEG0 241 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 NAIPQ13075 1403 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 PCNX3Q9H6A9 2034 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 SYNJ2O15056 1496 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 ERCC6Q03468 1493 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 SHANK2Q9UPX8 1470 aa3.79□□□□□ -1.8
LINC00560-201ENST00000564593 CACNA1FO60840 1977 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 CYB561D2O14569 222 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 EI24O14681 340 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 OAS1P00973 400 aaKnown RBP3.78□□□□□ -1.8
LINC00560-201ENST00000564593 FCGR3AP08637 254 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 CYP11B1P15538 503 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 DNAJB1P25685 340 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 SGSHP51688 502 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 SLC7A2P52569 658 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 RAG2P55895 527 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 ZKSCAN8Q15776 578 aaPredicted RBP3.78□□□□□ -1.8
LINC00560-201ENST00000564593 SNAI3Q3KNW1 292 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 ANKRD55Q3KP44 614 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 EMBQ6PCB8 327 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 GOLGA7Q7Z5G4 137 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 GPBP1Q86WP2 473 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF397Q8NF99 534 aaPredicted RBP3.78□□□□□ -1.8
LINC00560-201ENST00000564593 CPXM1Q96SM3 734 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 RAB11FIP5Q9BXF6 653 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 EMCNQ9ULC0 261 aa3.78□□□□□ -1.8
LINC00560-201ENST00000564593 TRIM16O95361 564 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 SEMA4FO95754 770 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 HCKP08631 526 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 HSD17B1P14061 328 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 UCP1P25874 307 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 PTPN4P29074 926 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 PRELPP51888 382 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 TMEM44Q2T9K0 475 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 TTC31Q49AM3 519 aaPredicted RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ZNF772Q68DY9 489 aaPredicted RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ARMCX5Q6P1M9 558 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ZNF841Q6ZN19 808 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 MOB2Q70IA6 237 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 TMUB2Q71RG4 321 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 GET4Q7L5D6 327 aaPredicted RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 TIPARPQ7Z3E1 657 aaKnown RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 SYVN1Q86TM6 617 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ADCK1Q86TW2 530 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 RANBP3LQ86VV4 465 aaPredicted RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 WDR36Q8NI36 951 aaKnown RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 NCLNQ969V3 563 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 TBC1D31Q96DN5 1066 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 CCDC51Q96ER9 411 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 C19orf43Q9BQ61 176 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 RBM24Q9BX46 236 aaKnown RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 EGLN1Q9GZT9 426 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ADNPQ9H2P0 1102 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 RNF41Q9H4P4 317 aaPredicted RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ALG9Q9H6U8 611 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ISY1Q9ULR0 285 aaKnown RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 TROQ12816 1431 aaPredicted RBP3.77□□□□□ -1.81
LINC00560-201ENST00000564593 SNED1Q8TER0 1413 aa3.77□□□□□ -1.81
LINC00560-201ENST00000564593 ADGRL2O95490 1459 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 IGHV3-16A0A0C4DH30 117 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 A0A0J9YVX5 310 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 SHISA9B4DS77 424 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 STK17BO94768 372 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 ECDO95905 644 aaPredicted RBP3.76□□□□□ -1.81
LINC00560-201ENST00000564593 IGHV3-13P01766 116 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 MT-ND1P03886 318 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 FUT1P19526 365 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 CCND2P30279 289 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 NOP14P78316 857 aaKnown RBP3.76□□□□□ -1.81
LINC00560-201ENST00000564593 CCL14Q16627 93 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 ZSWIM7Q19AV6 140 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 PARP6Q2NL67 630 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 ZNF699Q32M78 642 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 C12orf60Q5U649 245 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 REP15Q6BDI9 236 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 ABRAXAS1Q6UWZ7 409 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 APOOLQ6UXV4 268 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 UNC5DQ6UXZ4 953 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 MINDY2Q8NBR6 621 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 MAPK1IP1LQ8NDC0 245 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 BEST4Q8NFU0 473 aa3.76□□□□□ -1.81
LINC00560-201ENST00000564593 OR4Q3Q8NH05 313 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms