RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PEX19P40855 299 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 STT3AP46977 705 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 HSPA7P48741 367 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ASCL1P50553 236 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 IRF8Q02556 426 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 CDK5R2Q13319 367 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SLC10A1Q14973 349 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 PIGGQ5H8A4 983 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SFRP5Q5T4F7 317 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 PGM2L1Q6PCE3 622 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SEZ6L2Q6UXD5 910 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 CLNKQ7Z7G1 428 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ZBED8Q8IZ13 594 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 LRRC25Q8N386 305 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ZNF321PQ8N8H1 164 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 BBOF1Q8ND07 529 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 UBTD2Q8WUN7 234 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 FBXW5Q969U6 566 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SARAFQ96BY9 339 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SENP5Q96HI0 755 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 FBXL20Q96IG2 436 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 RBBP8Q99708 897 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 MAPKAP1Q9BPZ7 522 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 CD244Q9BZW8 370 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ZNF703Q9H7S9 590 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ACKR4Q9NPB9 350 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 OXSMQ9NWU1 459 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 TUBA8Q9NY65 449 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 H2AFY2Q9P0M6 372 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 RNF14Q9UBS8 474 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 TRPS1Q9UHF7 1281 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ADGRE2Q9UHX3 823 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 MTO1Q9Y2Z2 717 aaKnown RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SPACA6W5XKT8 324 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 TCRBV9S1A1TA0A576 114 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 SHISA3A0PJX4 238 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CCDC189A1A4V9 331 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CLCA1A8K7I4 914 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 EFCAB8A8MWE9 144 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CXorf49A8MYA2 514 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 FAM229AH3BQW9 127 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 GSTA4O15217 222 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 PHGDHO43175 533 aaKnown RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 LDB3O75112 727 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ALX3O95076 343 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 LRATO95237 230 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 P04436 131 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 GSTA2P09210 222 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 COX7A2P14406 83 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 GALNSP34059 522 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 GP5P40197 560 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 PIK3CBP42338 1070 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 RPL21P46778 160 aaKnown RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 TRPC1P48995 793 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 RAB10P61026 200 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CHIT1Q13231 466 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 DAZAP2Q15038 168 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 HIST2H2ACQ16777 129 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 WLSQ5T9L3 541 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 RIPPLY2Q5TAB7 128 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 DEPDC1Q5TB30 811 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 KHDRBS2Q5VWX1 349 aaKnown RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 SLC22A10Q63ZE4 541 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 HIST2H2AA3Q6FI13 130 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 MED27Q6P2C8 311 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 FAM47EQ6ZV65 393 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ISCA2Q86U28 154 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CXorf67Q86X51 503 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 PHC2Q8IXK0 858 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 C9orf40Q8IXQ3 194 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 KLHL7Q8IXQ5 586 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ST13P4Q8IZP2 240 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 FBXW8Q8N3Y1 598 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ZCCHC7Q8N3Z6 543 aaKnown RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 OR7G3Q8NG95 312 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 STAG3L4Q8TBR4 150 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 SLC22A8Q8TCC7 542 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 PYROXD1Q8WU10 500 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CDKL2Q92772 493 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 TANKQ92844 425 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 RNASE6Q93091 150 aaKnown RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 SPACA9Q96E40 222 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CMTM7Q96FZ5 175 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ART5Q96L15 291 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ATOH8Q96SQ7 321 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 SLC6A15Q9H2J7 730 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 IPPKQ9H8X2 491 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CAB39LQ9H9S4 337 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 ZFP64Q9NPA5 681 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.17□□□□□ -0.94
SCFD1-220ENST00000556486 CNIH4Q9P003 139 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 B4GALT7Q9UBV7 327 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 IKBKGQ9Y6K9 419 aa9.17□□□□□ -0.94
SCFD1-220ENST00000556486 HIVEP2P31629 2446 aa9.16□□□□□ -0.94
SCFD1-220ENST00000556486 ANK3Q12955 4377 aaKnown RBP9.16□□□□□ -0.94
SCFD1-220ENST00000556486 TRGV5A0A0B4J1U4 118 aa9.16□□□□□ -0.94
SCFD1-220ENST00000556486 LRRC3CA6NJW4 275 aa9.16□□□□□ -0.94
SCFD1-220ENST00000556486 FAM171A2A8MVW0 826 aa9.16□□□□□ -0.94
SCFD1-220ENST00000556486 EEF1E1-BLOC1S5C9J1V9 151 aa9.16□□□□□ -0.94
SCFD1-220ENST00000556486 K7EPI3 171 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms