RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 RIOK1Q9BRS2 568 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 DGCR6LQ9BY27 220 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SLC5A7Q9GZV3 580 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 HOXD1Q9GZZ0 328 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CUEDC2Q9H467 287 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 VAT1LQ9HCJ6 419 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM181Q9P2C4 612 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 KLHL8Q9P2G9 620 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TRPC4Q9UBN4 977 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CACNG5Q9UF02 275 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SATB2Q9UPW6 733 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 PTPRBP23467 1997 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF638Q14966 1978 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 RP1L1Q8IWN7 2480 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CCDC171Q6TFL3 1326 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM131Q92545 1883 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 A0A087X0K7 114 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 A0A1W2PRV1 198 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MAGEB16A2A368 324 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SMIM30A4D0T7 59 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 NKX6-3A6NJ46 265 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 DDX39AO00148 427 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SURF4O15260 269 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MAGEB2O15479 319 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 RANBP6O60518 1105 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 RTN2O75298 545 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SURF6O75683 361 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 GRAP2O75791 330 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CIAO1O76071 339 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZFAND5O76080 213 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 LETM1O95202 739 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CLDN1O95832 211 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TBX6O95947 436 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 IGHEP01854 428 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF883P0CG24 379 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 RNF224P0DH78 156 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ATP6V1B1P15313 513 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 VCLP18206 1134 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SRD5A2P31213 254 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SERPINB6P35237 376 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MMP12P39900 470 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MAGEB1P43366 347 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TSFMP43897 325 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TAF6P49848 677 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 PMP22Q01453 160 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 C17orf67Q0P5P2 114 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 DRP2Q13474 957 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 LY6DQ14210 128 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 FAM106AQ4KMX7 169 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SLC39A12Q504Y0 691 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ATP1A1-AS1Q5TC04 95 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 AGAP6Q5VW22 663 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SLC27A4Q6P1M0 643 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SIGLEC15Q6ZMC9 328 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TRMT11Q7Z4G4 463 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SERINC5Q86VE9 423 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZC3H3Q8IXZ2 948 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CCDC185Q8N715 623 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM99Q8N816 258 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF713Q8N859 430 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 WDSUB1Q8N9V3 476 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SMYD1Q8NB12 490 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 COLGALT1Q8NBJ5 622 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SAP25Q8TEE9 199 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CHURC1Q8WUH1 139 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CASP10Q92851 521 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SLCO2A1Q92959 643 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF689Q96CS4 500 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 AP2M1Q96CW1 435 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 OMA1Q96E52 524 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ART5Q96L15 291 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 PANX3Q96QZ0 392 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TAAR1Q96RJ0 339 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 USP28Q96RU2 1077 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 KRT12Q99456 494 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SLC39A8Q9C0K1 460 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 BOLA2Q9H3K6 86 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MTHFD2LQ9H903 347 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MED20Q9H944 212 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 AKIRIN1Q9H9L7 192 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 RNPEPL1Q9HAU8 725 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 ZDHHC4Q9NPG8 344 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MRPL17Q9NRX2 175 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 BARHL2Q9NY43 387 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 SPG21Q9NZD8 308 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MTRRQ9UBK8 725 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 EXOGQ9Y2C4 368 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 PRG3Q9Y2Y8 225 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 TMED7Q9Y3B3 224 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 CSNK1G3Q9Y6M4 447 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 LRBAP50851 2863 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 VWA8A3KMH1 1905 aa1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MTCL1Q9Y4B5 1905 aaKnown RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 COL5A1P20908 1838 aaPredicted RBP1.3□□□□□ -2.2
PRPF39-208ENST00000554785 MYO16Q9Y6X6 1858 aa1.29□□□□□ -2.2
PRPF39-208ENST00000554785 KNTC1P50748 2209 aa1.29□□□□□ -2.2
PRPF39-208ENST00000554785 FBN2P35556 2912 aa1.29□□□□□ -2.2
PRPF39-208ENST00000554785 F8P00451 2351 aa1.29□□□□□ -2.2
PRPF39-208ENST00000554785 HELZP42694 1942 aaKnown RBP1.29□□□□□ -2.2
PRPF39-208ENST00000554785 MYLKQ15746 1914 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms